Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol | 71.08 | 89.39 |
| KRH19714 | Soybean | nucleus | 73.49 | 87.77 |
| GSMUA_Achr6P15320_001 | Banana | cytosol | 69.28 | 87.12 |
| VIT_13s0019g00550.t01 | Wine grape | cytosol | 71.69 | 85.61 |
| EER95084 | Sorghum | cytosol | 70.48 | 84.17 |
| Solyc10g084660.1.1 | Tomato | cytosol, extracellular | 69.88 | 83.45 |
| Solyc09g010440.2.1 | Tomato | plastid | 69.88 | 83.45 |
| GSMUA_Achr6P33310_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 83.13 | 83.13 |
| AT5G59890.1 | Thale cress | cytosol | 69.28 | 82.73 |
| Bra006686.1-P | Field mustard | cytosol | 65.66 | 82.58 |
| CDX71067 | Canola | cytosol | 65.66 | 82.58 |
| PGSC0003DMT400071339 | Potato | cytosol | 71.08 | 82.52 |
| Bra002522.1-P | Field mustard | cytosol | 68.67 | 82.01 |
| PGSC0003DMT400023061 | Potato | cytosol | 68.67 | 82.01 |
| PGSC0003DMT400028567 | Potato | cytosol | 68.67 | 82.01 |
| Solyc04g011370.2.1 | Tomato | extracellular | 70.48 | 81.82 |
| CDY31586 | Canola | cytosol | 65.06 | 81.82 |
| GSMUA_Achr8P11370_001 | Banana | cytosol | 54.22 | 81.08 |
| PGSC0003DMT400087280 | Potato | cytosol | 66.27 | 80.88 |
| KRH11708 | Soybean | mitochondrion | 67.47 | 80.58 |
| KRH32309 | Soybean | cytosol, nucleus | 69.88 | 80.56 |
| KRH36708 | Soybean | mitochondrion | 66.87 | 79.86 |
| Bra020277.1-P | Field mustard | cytosol | 70.48 | 78.52 |
| Solyc06g005360.2.1 | Tomato | cytosol, extracellular, nucleus | 63.86 | 77.37 |
| PGSC0003DMT400008913 | Potato | cytosol | 63.86 | 77.37 |
| AT3G46010.2 | Thale cress | cytosol | 69.88 | 77.33 |
| GSMUA_AchrUn_... | Banana | cytosol | 61.45 | 77.27 |
| Bra006687.1-P | Field mustard | cytosol | 71.08 | 77.12 |
| CDX88730 | Canola | cytosol | 70.48 | 75.97 |
| GSMUA_Achr11P... | Banana | cytosol | 60.24 | 75.76 |
| AT5G59880.1 | Thale cress | cytosol | 63.25 | 75.54 |
| Bra020276.1-P | Field mustard | cytosol | 69.28 | 75.16 |
| GSMUA_Achr11P... | Banana | cytosol | 59.64 | 75.0 |
| CDY09242 | Canola | cytosol | 68.67 | 74.51 |
| CDX71068 | Canola | cytosol | 72.29 | 73.17 |
| GSMUA_Achr1P00290_001 | Banana | cytosol | 57.83 | 72.73 |
| VIT_06s0004g04280.t01 | Wine grape | cytosol | 73.49 | 72.62 |
| GSMUA_Achr4P29400_001 | Banana | cytosol | 42.17 | 71.43 |
| AT3G46000.2 | Thale cress | cytosol | 66.27 | 70.51 |
| GSMUA_Achr5P24750_001 | Banana | cytosol | 46.39 | 69.37 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, vacuole | 77.11 | 69.19 |
| CDX99133 | Canola | cytosol, plastid | 68.67 | 68.26 |
| Bra038266.1-P | Field mustard | cytosol | 68.07 | 67.66 |
| CDX86048 | Canola | cytosol, plastid | 68.07 | 67.66 |
| GSMUA_Achr7P00900_001 | Banana | cytosol | 53.61 | 67.42 |
| VIT_08s0040g03360.t01 | Wine grape | plastid | 75.3 | 66.14 |
| GSMUA_Achr2P13120_001 | Banana | cytosol | 56.63 | 64.83 |
| VIT_11s0103g00260.t01 | Wine grape | cytosol | 44.58 | 62.71 |
| GSMUA_Achr6P15330_001 | Banana | cytosol, plastid | 33.73 | 62.22 |
| GSMUA_Achr2P17320_001 | Banana | cytosol | 53.61 | 61.38 |
| GSMUA_Achr7P16650_001 | Banana | cytosol | 34.34 | 59.38 |
| CDX88731 | Canola | cytosol, plastid | 70.48 | 58.79 |
| GSMUA_Achr11P... | Banana | cytosol, plastid | 50.0 | 58.04 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 74.1 | 56.68 |
| GSMUA_Achr5P18890_001 | Banana | cytosol, plastid | 48.8 | 56.64 |
| AT3G45990.1 | Thale cress | cytosol | 45.18 | 56.39 |
| VIT_10s0092g00330.t01 | Wine grape | cytosol | 30.72 | 56.04 |
| GSMUA_Achr5P12270_001 | Banana | plastid, vacuole | 65.66 | 54.23 |
| GSMUA_Achr1P09160_001 | Banana | cytosol | 57.83 | 49.23 |
| GSMUA_Achr11P... | Banana | cytosol | 49.4 | 48.52 |
| CDX80216 | Canola | cytosol | 71.08 | 46.83 |
| GSMUA_Achr2P18590_001 | Banana | cytosol | 63.86 | 46.7 |
| GSMUA_Achr2P16220_001 | Banana | cytosol | 77.71 | 46.4 |
| GSMUA_Achr2P11510_001 | Banana | cytosol | 61.45 | 44.74 |
| GSMUA_AchrUn_... | Banana | extracellular | 19.28 | 36.78 |
Protein Annotations
| MapMan:20.2.2.8 | Gene3D:3.40.20.10 | InterPro:ADF-H | InterPro:ADF-H/Gelsolin-like_dom_sf | InterPro:ADF/Cofilin | GO:GO:0003674 |
| GO:GO:0003779 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005856 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015629 | GO:GO:0016043 | GO:GO:0030042 |
| EnsemblPlantsGene:GSMUA_Achr9G04050_001 | EnsemblPlants:GSMUA_Achr9P04050_001 | EnsemblPlants:GSMUA_Achr9T04050_001 | InterPro:IPR002108 | InterPro:IPR029006 | UniProt:M0TXB4 |
| PFAM:PF00241 | PFscan:PS51263 | PANTHER:PTHR11913 | PANTHER:PTHR11913:SF50 | SMART:SM00102 | SUPFAM:SSF55753 |
| SignalP:SignalP-noTM | UniParc:UPI000295990E | SEG:seg | : | : | : |
Description
Actin-depolymerizing factor 2 [Source:GMGC_GENE;Acc:GSMUA_Achr9G04050_001]
Coordinates
chr9:-:2734707..2736636
Molecular Weight (calculated)
18950.6 Da
IEP (calculated)
4.757
GRAVY (calculated)
-0.237
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTPLLLPFD SWIVATDLFA VIAATLEMAN AASGMAVNDD CKLKFLELKA KRTYRFIVFK IDEKQKEVVV DKVGEPSSNY DDFAAALPTD ECRYAIYDFD
101: FVTEENCQKS KIFFIAWSPD SSRVRSKMLY ASSKDRFKRE LDGIQVELQA TDPTEMGLDV FRSRAN
101: FVTEENCQKS KIFFIAWSPD SSRVRSKMLY ASSKDRFKRE LDGIQVELQA TDPTEMGLDV FRSRAN
001: MANAASGMAV HDDCKLRFLE LKAKRTHRFI VYKIEEKQKQ VVVEKVGQPI QTYEEFAACL PADECRYAIY DFDFVTAENC QKSKIFFIAW CPDIAKVRSK
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVFRSRAN
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVFRSRAN
Arabidopsis Description
ADF1Actin depolymerizing factor 1 [Source:UniProtKB/TrEMBL;Acc:A8MR09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.