Factsheet for Solyc10g084660.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028567	Potato	cytosol	97.12	97.12
Solyc09g010440.2.1	Tomato	plastid	89.21	89.21
Solyc04g011370.2.1	Tomato	extracellular	87.77	85.31
GSMUA_Achr10P...	Banana	cytosol	80.58	84.85
Solyc06g005360.2.1	Tomato	cytosol, extracellular, nucleus	83.45	84.67
EER95084	Sorghum	cytosol	81.3	81.3
Os05t0113400-01	Rice	cytosol, extracellular, plastid	80.58	81.16
EES17589	Sorghum	cytosol	79.86	79.86
HORVU0Hr1G000200.1	Barley	cytosol	79.86	79.86
Solyc06g035980.2.1	Tomato	cytosol	78.42	79.56
GSMUA_Achr6P15320_001	Banana	cytosol	74.82	78.79
Zm00001d035629_P001	Maize	cytosol	76.98	76.98
Zm00001d035625_P001	Maize	cytosol	71.22	75.57
Solyc03g025750.2.1	Tomato	cytosol	70.5	71.53
GSMUA_Achr6P33310_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	84.17	70.48
GSMUA_Achr9P04050_001	Banana	endoplasmic reticulum, extracellular	83.45	69.88
Solyc01g094400.2.1	Tomato	unclear	68.35	69.34
VIT_10s0092g00330.t01	Wine grape	cytosol	45.32	69.23
Solyc10g017550.2.1	Tomato	unclear	69.06	69.06
VIT_11s0103g00260.t01	Wine grape	cytosol	56.83	66.95
VIT_08s0040g03360.t01	Wine grape	plastid	90.65	66.67
GSMUA_Achr10P...	Banana	endoplasmic reticulum, vacuole	84.89	63.78
Solyc09g072590.2.1	Tomato	cytosol	63.31	60.69
Solyc09g090110.2.1	Tomato	cytosol	61.15	58.62
Solyc01g111380.2.1	Tomato	cytosol, plastid	58.99	57.34
GSMUA_Achr10P...	Banana	endoplasmic reticulum	82.01	52.53
Solyc09g072600.1.1	Tomato	cytosol	17.99	51.02
GSMUA_Achr2P16220_001	Banana	cytosol	84.89	42.45

Protein Annotations

MapMan:20.2.2.8	Gene3D:3.40.20.10	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin	GO:GO:0003674
GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030042
InterPro:IPR002108	InterPro:IPR029006	UniProt:K4D3Q0	PFAM:PF00241	PFscan:PS51263	PANTHER:PTHR11913
PANTHER:PTHR11913:SF50	SMART:SM00102	SUPFAM:SSF55753	EnsemblPlantsGene:Solyc10g084660.1	EnsemblPlants:Solyc10g084660.1.1	UniParc:UPI000276A403
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr10:+:64103183..64105365

Molecular Weight (calculated)

16113.1 Da

IEP (calculated)

5.072

GRAVY (calculated)

-0.523

Length

139 amino acids

Sequence
(BLAST)

001: MANAASGMAV HDDCKLTFLE LKTKRTHRFI VFKIEEKQKQ VVVEKVGEPT QSYEDFAESL PADECRYAVY DFDFVTEENC QKSRIFFIAW SPDTARVRSK
101: MIYASSKDRF KRELDGIQIE LQATDPTEME LDVIKSRAN

Best Arabidopsis Sequence Match ( AT5G59890.1 )
(BLAST)

001: MANAASGMAV HDDCKLRFLE LKAKRTHRFI VYKIEEKQKQ VIVEKVGEPI LTYEDFAASL PADECRYAIY DFDFVTAENC QKSKIFFIAW CPDVAKVRSK
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVLKSRVN

Arabidopsis Description

ADF4Actin-depolymerizing factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.