Factsheet for Solyc04g011370.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

extracellular: 22364583

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071339	Potato	cytosol	99.3	99.3
PGSC0003DMT400087280	Potato	cytosol	93.71	98.53
GSMUA_Achr10P...	Banana	cytosol	81.12	87.88
Solyc10g084660.1.1	Tomato	cytosol, extracellular	85.31	87.77
Solyc09g010440.2.1	Tomato	plastid	81.82	84.17
Solyc06g005360.2.1	Tomato	cytosol, extracellular, nucleus	80.42	83.94
Os05t0113400-01	Rice	cytosol, extracellular, plastid	79.72	82.61
GSMUA_Achr6P15320_001	Banana	cytosol	76.22	82.58
EER95084	Sorghum	cytosol	79.72	82.01
Solyc06g035980.2.1	Tomato	cytosol	76.92	80.29
HORVU0Hr1G000200.1	Barley	cytosol	76.92	79.14
EES17589	Sorghum	cytosol	76.22	78.42
Zm00001d035629_P001	Maize	cytosol	74.13	76.26
Zm00001d035625_P001	Maize	cytosol	68.53	74.81
Solyc03g025750.2.1	Tomato	cytosol	69.23	72.26
GSMUA_Achr6P33310_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	83.22	71.69
GSMUA_Achr9P04050_001	Banana	endoplasmic reticulum, extracellular	81.82	70.48
Solyc01g094400.2.1	Tomato	unclear	65.73	68.61
Solyc10g017550.2.1	Tomato	unclear	65.73	67.63
GSMUA_Achr10P...	Banana	endoplasmic reticulum, vacuole	82.52	63.78
Solyc09g072590.2.1	Tomato	cytosol	60.14	59.31
Solyc01g111380.2.1	Tomato	cytosol, plastid	55.94	55.94
Solyc09g090110.2.1	Tomato	cytosol	55.94	55.17
GSMUA_Achr10P...	Banana	endoplasmic reticulum	81.12	53.46
Solyc09g072600.1.1	Tomato	cytosol	16.08	46.94
GSMUA_Achr2P16220_001	Banana	cytosol	81.12	41.73

Protein Annotations

MapMan:20.2.2.8	Gene3D:3.40.20.10	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin	GO:GO:0003674
GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030042
InterPro:IPR002108	InterPro:IPR029006	UniProt:K4BPJ2	PFAM:PF00241	PFscan:PS51263	PANTHER:PTHR11913
PANTHER:PTHR11913:SF50	SMART:SM00102	SUPFAM:SSF55753	EnsemblPlantsGene:Solyc04g011370.2	EnsemblPlants:Solyc04g011370.2.1	UniParc:UPI0002765FDB

Description

No Description!

Coordinates

chr4:+:3845935..3848508

Molecular Weight (calculated)

16494.6 Da

IEP (calculated)

5.081

GRAVY (calculated)

-0.469

Length

143 amino acids

Sequence
(BLAST)

001: MANAASGMAV HDDCKLKFLE LKAKRTYRFI IYKIEEKQKQ VIVEKLGEPT ESYEDFAAGL PADECRYAVY DFDFMTEENC QKSRIFFIAW SPDTARVRSK
101: MIYASSKDRF KRELDGFQVE LQATDPTEMG LDVFRSRAGG IEC

Best Arabidopsis Sequence Match ( AT3G46010.1 )
(BLAST)

001: MANAASGMAV HDDCKLRFLE LKAKRTHRFI VYKIEEKQKQ VVVEKVGQPI QTYEEFAACL PADECRYAIY DFDFVTAENC QKSKIFFIAW CPDIAKVRSK
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVFRSRAN

Arabidopsis Description

ADF1Actin depolymerizing factor 1 [Source:UniProtKB/TrEMBL;Acc:A8MR09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.