Factsheet for PGSC0003DMT400071339

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g011370.2.1	Tomato	extracellular	99.3	99.3
PGSC0003DMT400087280	Potato	cytosol	94.41	99.26
GSMUA_Achr10P...	Banana	cytosol	80.42	87.12
PGSC0003DMT400028567	Potato	cytosol	84.62	87.05
PGSC0003DMT400023061	Potato	cytosol	83.22	85.61
Os05t0113400-01	Rice	cytosol, extracellular, plastid	80.42	83.33
PGSC0003DMT400008913	Potato	cytosol	79.72	83.21
EER95084	Sorghum	cytosol	80.42	82.73
GSMUA_Achr6P15320_001	Banana	cytosol	75.52	81.82
HORVU0Hr1G000200.1	Barley	cytosol	77.62	79.86
EES17589	Sorghum	cytosol	76.92	79.14
PGSC0003DMT400076911	Potato	cytosol	74.83	77.54
Zm00001d035629_P001	Maize	cytosol	74.83	76.98
Zm00001d035625_P001	Maize	cytosol	69.23	75.57
PGSC0003DMT400037205	Potato	cytosol	70.63	73.72
GSMUA_Achr6P33310_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	83.92	72.29
GSMUA_Achr9P04050_001	Banana	endoplasmic reticulum, extracellular	82.52	71.08
PGSC0003DMT400000464	Potato	cytosol	66.43	69.34
PGSC0003DMT400026582	Potato	mitochondrion	66.43	68.35
GSMUA_Achr10P...	Banana	endoplasmic reticulum, vacuole	81.82	63.24
PGSC0003DMT400015865	Potato	cytosol	55.94	55.94
PGSC0003DMT400044218	Potato	cytosol	56.64	55.86
GSMUA_Achr10P...	Banana	endoplasmic reticulum	80.42	53.0
PGSC0003DMT400026656	Potato	mitochondrion	60.84	48.07
GSMUA_Achr2P16220_001	Banana	cytosol	81.82	42.09

Protein Annotations

EntrezGene:102585767	EntrezGene:102590986	EntrezGene:102596934	MapMan:20.2.2.8	Gene3D:3.40.20.10	InterPro:ADF-H
InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin	GO:GO:0003674	GO:GO:0003779	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0008150	GO:GO:0009987
GO:GO:0015629	GO:GO:0016043	GO:GO:0030042	InterPro:IPR002108	InterPro:IPR029006	UniProt:M1CNK8
PFAM:PF00241	EnsemblPlantsGene:PGSC0003DMG400027752	PGSC:PGSC0003DMG400027752	EnsemblPlants:PGSC0003DMT400071339	PFscan:PS51263	PANTHER:PTHR11913
PANTHER:PTHR11913:SF50	SMART:SM00102	SUPFAM:SSF55753	UniParc:UPI000296ABF0	RefSeq:XP_006339034.1	RefSeq:XP_006341057.1
RefSeq:XP_006365713.1	:	:	:	:	:

Description

Actin-depolymerizing factor 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400027752]

Coordinates

chr4:+:6985370..6988106

Molecular Weight (calculated)

16480.6 Da

IEP (calculated)

5.081

GRAVY (calculated)

-0.471

Length

143 amino acids

Sequence
(BLAST)

001: MANAASGMAV HDDCKLKFLE LKAKRTYRFI IYKIEEKQKQ VVVEKLGEPT ESYEDFAAGL PADECRYAVY DFDFMTEENC QKSRIFFIAW SPDTARVRSK
101: MIYASSKDRF KRELDGFQVE LQATDPTEMG LDVFRSRAGG IEC

Best Arabidopsis Sequence Match ( AT3G46010.1 )
(BLAST)

001: MANAASGMAV HDDCKLRFLE LKAKRTHRFI VYKIEEKQKQ VVVEKVGQPI QTYEEFAACL PADECRYAIY DFDFVTAENC QKSKIFFIAW CPDIAKVRSK
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVFRSRAN

Arabidopsis Description

ADF1Actin depolymerizing factor 1 [Source:UniProtKB/TrEMBL;Acc:A8MR09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.