Factsheet for PGSC0003DMT400026582

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g017550.2.1	Tomato	unclear	97.84	97.84
PGSC0003DMT400000464	Potato	cytosol	87.77	89.05
GSMUA_Achr8P11370_001	Banana	cytosol	60.43	75.68
GSMUA_Achr11P...	Banana	cytosol	71.22	75.0
VIT_16s0050g00220.t01	Wine grape	cytosol	69.78	73.48
PGSC0003DMT400037205	Potato	cytosol	70.5	71.53
GSMUA_AchrUn_...	Banana	cytosol	67.63	71.21
EES12628	Sorghum	cytosol	70.5	70.5
TraesCS6D01G229200.1	Wheat	cytosol	70.5	70.5
TraesCS6A01G247000.1	Wheat	cytosol	70.5	70.5
Os04t0555700-01	Rice	plasma membrane	70.5	70.5
TraesCS2B01G429500.1	Wheat	cytosol	70.5	70.5
GSMUA_Achr11P...	Banana	cytosol	66.19	69.7
Zm00001d051388_P001	Maize	cytosol	69.06	69.06
EES05762	Sorghum	cytosol	69.06	69.06
PGSC0003DMT400076911	Potato	cytosol	68.35	68.84
PGSC0003DMT400028567	Potato	cytosol	68.35	68.35
PGSC0003DMT400023061	Potato	cytosol	68.35	68.35
Zm00001d017516_P001	Maize	cytosol	68.35	68.35
GSMUA_Achr1P00290_001	Banana	cytosol	64.75	68.18
PGSC0003DMT400071339	Potato	cytosol	68.35	66.43
TraesCS6B01G277600.1	Wheat	cytosol	69.06	66.21
PGSC0003DMT400087280	Potato	cytosol	64.75	66.18
PGSC0003DMT400008913	Potato	cytosol	64.03	64.96
PGSC0003DMT400044218	Potato	cytosol	53.96	51.72
PGSC0003DMT400015865	Potato	cytosol	51.8	50.35
GSMUA_Achr5P12270_001	Banana	plastid, vacuole	71.94	49.75
PGSC0003DMT400026656	Potato	mitochondrion	56.83	43.65
GSMUA_Achr2P11510_001	Banana	cytosol	71.22	43.42
GSMUA_Achr2P18590_001	Banana	cytosol	70.5	43.17
VIT_15s0046g03040.t01	Wine grape	cytosol	76.98	41.8

Protein Annotations

MapMan:20.2.2.8	Gene3D:3.40.20.10	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin	GO:GO:0003674
GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030042
InterPro:IPR002108	InterPro:IPR029006	UniProt:M1ANE0	PFAM:PF00241	EnsemblPlantsGene:PGSC0003DMG400010266	PGSC:PGSC0003DMG400010266
EnsemblPlants:PGSC0003DMT400026582	PFscan:PS51263	PANTHER:PTHR11913	PANTHER:PTHR11913:SF30	SMART:SM00102	SUPFAM:SSF55753
UniParc:UPI00029551EA	SEG:seg	:	:	:	:

Description

Actin-depolymerizing factor 10 [Source:PGSC_GENE;Acc:PGSC0003DMG400010266]

Coordinates

chr10:+:38806526..38808937

Molecular Weight (calculated)

15956.8 Da

IEP (calculated)

5.719

GRAVY (calculated)

-0.474

Length

139 amino acids

Sequence
(BLAST)

001: MANSASGIAV SDECKLRFLE LKAKRNHRFL VFKIDESVQQ VVVEKVGGQA ETHDDFANSM PPSECRYAVF DYDWTTDENV QKSRIFFVAW SPETARVRSK
101: MLYASSKDRF RRELDGVQVE LQATDPSEMS LDTFIGRIH

Best Arabidopsis Sequence Match ( AT1G01750.1 )
(BLAST)

001: MANSASGMHV SDECKLKFLE LKAKRNYRFI VFKIDEKAQQ VMIDKLGNPE ETYEDFTRSI PEDECRYAVY DYDFTTPENC QKSKIFFIAW SPDTSRVRSK
101: MLYASSKDRF KRELDGIQVE LQATDPSEMS LDIIKGRVNL

Arabidopsis Description

ADF11actin depolymerizing factor 11 [Source:TAIR;Acc:AT1G01750]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.