Factsheet for Solyc10g017550.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026582	Potato	mitochondrion	97.84	97.84
Solyc01g094400.2.1	Tomato	unclear	86.33	87.59
GSMUA_Achr8P11370_001	Banana	cytosol	59.71	74.77
GSMUA_Achr11P...	Banana	cytosol	70.5	74.24
VIT_16s0050g00220.t01	Wine grape	cytosol	69.06	72.73
TraesCS6D01G229200.1	Wheat	cytosol	70.5	70.5
GSMUA_AchrUn_...	Banana	cytosol	66.91	70.45
Solyc03g025750.2.1	Tomato	cytosol	69.06	70.07
EES12628	Sorghum	cytosol	69.78	69.78
TraesCS6A01G247000.1	Wheat	cytosol	69.78	69.78
Os04t0555700-01	Rice	plasma membrane	69.78	69.78
TraesCS2B01G429500.1	Wheat	cytosol	69.78	69.78
Solyc10g084660.1.1	Tomato	cytosol, extracellular	69.06	69.06
GSMUA_Achr11P...	Banana	cytosol	65.47	68.94
Zm00001d051388_P001	Maize	cytosol	68.35	68.35
EES05762	Sorghum	cytosol	68.35	68.35
Solyc06g035980.2.1	Tomato	cytosol	66.91	67.88
Zm00001d017516_P001	Maize	cytosol	67.63	67.63
GSMUA_Achr1P00290_001	Banana	cytosol	64.03	67.42
Solyc09g010440.2.1	Tomato	plastid	66.91	66.91
Solyc04g011370.2.1	Tomato	extracellular	67.63	65.73
TraesCS6B01G277600.1	Wheat	cytosol	68.35	65.52
Solyc06g005360.2.1	Tomato	cytosol, extracellular, nucleus	62.59	63.5
Solyc09g072590.2.1	Tomato	cytosol	57.55	55.17
Solyc09g090110.2.1	Tomato	cytosol	53.96	51.72
Solyc01g111380.2.1	Tomato	cytosol, plastid	52.52	51.05
GSMUA_Achr5P12270_001	Banana	plastid, vacuole	71.22	49.25
Solyc09g072600.1.1	Tomato	cytosol	16.55	46.94
GSMUA_Achr2P11510_001	Banana	cytosol	70.5	42.98
GSMUA_Achr2P18590_001	Banana	cytosol	69.78	42.73
VIT_15s0046g03040.t01	Wine grape	cytosol	76.26	41.41

Protein Annotations

MapMan:20.2.2.8	Gene3D:3.40.20.10	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin	GO:GO:0003674
GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030042
InterPro:IPR002108	InterPro:IPR029006	UniProt:K4CYN3	PFAM:PF00241	PFscan:PS51263	PANTHER:PTHR11913
PANTHER:PTHR11913:SF30	SMART:SM00102	SUPFAM:SSF55753	EnsemblPlantsGene:Solyc10g017550.2	EnsemblPlants:Solyc10g017550.2.1	UniParc:UPI000276C395
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr10:-:5531570..5534736

Molecular Weight (calculated)

15988.8 Da

IEP (calculated)

5.719

GRAVY (calculated)

-0.524

Length

139 amino acids

Sequence
(BLAST)

001: MANSASGIAV SDECKLRFLE LKAKRNHRYL VFKIDESVQQ VVVEKVGGQT ETHDDFANSM PPSECRYAVF DYDWTTDENV QKSRIFFVAW SPETARVRSK
101: MLYASSKDRF RRELDGVQVE LQATDPSEMS LDTFVGRIH

Best Arabidopsis Sequence Match ( AT1G01750.1 )
(BLAST)

001: MANSASGMHV SDECKLKFLE LKAKRNYRFI VFKIDEKAQQ VMIDKLGNPE ETYEDFTRSI PEDECRYAVY DYDFTTPENC QKSKIFFIAW SPDTSRVRSK
101: MLYASSKDRF KRELDGIQVE LQATDPSEMS LDIIKGRVNL

Arabidopsis Description

ADF11actin depolymerizing factor 11 [Source:TAIR;Acc:AT1G01750]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.