Factsheet for Solyc06g005360.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g065380.2.1
Solyc11g018610.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G59880.1	Solyc06g065380.2.1	AT1G35670.1	19130088
AT5G59880.1	Solyc11g018610.1.1	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008913	Potato	cytosol	100.0	100.0
KRH36708	Soybean	mitochondrion	87.59	86.33
KRH19714	Soybean	nucleus	87.59	86.33
KRH11708	Soybean	mitochondrion	86.86	85.61
Solyc10g084660.1.1	Tomato	cytosol, extracellular	84.67	83.45
Bra002522.1-P	Field mustard	cytosol	81.75	80.58
Solyc09g010440.2.1	Tomato	plastid	81.75	80.58
Solyc04g011370.2.1	Tomato	extracellular	83.94	80.42
CDY31586	Canola	cytosol	77.37	80.3
KRH32309	Soybean	cytosol, nucleus	83.94	79.86
AT5G59890.1	Thale cress	cytosol	81.02	79.86
Bra006686.1-P	Field mustard	cytosol	75.91	78.79
CDX71067	Canola	cytosol	75.91	78.79
AT5G59880.1	Thale cress	cytosol	79.56	78.42
Solyc06g035980.2.1	Tomato	cytosol	77.37	77.37
GSMUA_Achr10P...	Banana	cytosol	72.99	75.76
EER95084	Sorghum	cytosol	75.91	74.82
GSMUA_Achr6P15320_001	Banana	cytosol	70.8	73.48
Bra020277.1-P	Field mustard	cytosol	79.56	73.15
Os05t0113400-01	Rice	cytosol, extracellular, plastid	72.99	72.46
AT3G46010.2	Thale cress	cytosol	78.83	72.0
CDY09242	Canola	cytosol	80.29	71.9
Bra020276.1-P	Field mustard	cytosol	79.56	71.24
Bra006687.1-P	Field mustard	cytosol	79.56	71.24
CDX88730	Canola	cytosol	79.56	70.78
AT3G46000.2	Thale cress	cytosol	79.56	69.87
HORVU0Hr1G000200.1	Barley	cytosol	70.8	69.78
Solyc03g025750.2.1	Tomato	cytosol	69.34	69.34
EES17589	Sorghum	cytosol	69.34	68.35
CDX71068	Canola	cytosol	79.56	66.46
CDX99133	Canola	cytosol, plastid	80.29	65.87
Bra038266.1-P	Field mustard	cytosol	80.29	65.87
Zm00001d035625_P001	Maize	cytosol	62.77	65.65
Zm00001d035629_P001	Maize	cytosol	66.42	65.47
CDX86048	Canola	cytosol, plastid	79.56	65.27
Solyc01g094400.2.1	Tomato	unclear	64.96	64.96
GSMUA_Achr6P33310_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	78.1	64.46
GSMUA_Achr9P04050_001	Banana	endoplasmic reticulum, extracellular	77.37	63.86
Solyc10g017550.2.1	Tomato	unclear	63.5	62.59
AT3G45990.1	Thale cress	cytosol	56.93	58.65
GSMUA_Achr10P...	Banana	endoplasmic reticulum, vacuole	78.1	57.84
CDX88731	Canola	cytosol, plastid	81.02	55.78
Solyc09g072590.2.1	Tomato	cytosol	58.39	55.17
Solyc01g111380.2.1	Tomato	cytosol, plastid	54.74	52.45
Solyc09g090110.2.1	Tomato	cytosol	55.47	52.41
GSMUA_Achr10P...	Banana	endoplasmic reticulum	76.64	48.39
CDX80216	Canola	cytosol	82.48	44.84
Solyc09g072600.1.1	Tomato	cytosol	15.33	42.86
GSMUA_Achr2P16220_001	Banana	cytosol	77.37	38.13

Protein Annotations

MapMan:20.2.2.8	Gene3D:3.40.20.10	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin	GO:GO:0003674
GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030042
InterPro:IPR002108	InterPro:IPR029006	UniProt:K4C320	PFAM:PF00241	PFscan:PS51263	PANTHER:PTHR11913
PANTHER:PTHR11913:SF50	SMART:SM00102	SUPFAM:SSF55753	EnsemblPlantsGene:Solyc06g005360.2	EnsemblPlants:Solyc06g005360.2.1	UniParc:UPI0002765B30

Description

No Description!

Coordinates

chr6:+:372206..374775

Molecular Weight (calculated)

15848.0 Da

IEP (calculated)

6.519

GRAVY (calculated)

-0.350

Length

137 amino acids

Sequence
(BLAST)

001: MANAASGMAV HDDCKLKFLE LKTKRAFRFI VFKIEEKQII VEKLGEPAES YEDFCTHLPA DECRYAVYDF DFLTKESVPK SRIFFIAWCP DTSKVRSKMI
101: YASSKDRFKR ELDGIQIELQ ATDPTEMGLD VFKSRAN

Best Arabidopsis Sequence Match ( AT5G59880.1 )
(BLAST)

001: MANAASGMAV HDDCKLKFME LKTKRTHRFI IYKIEELQKQ VIVEKIGEPG QTHEDLAASL PADECRYAIF DFDFVSSEGV PRSRIFFVAW SPDTARVRSK
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVFKSRAN

Arabidopsis Description

ADF3Actin-depolymerizing factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.