CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 25806999

msms PMID: 25806999 doi

AH Kamal, S Komatsu

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba 305-8518, Japan.

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G59880.1	KRG91803	AT1G35670.1	19130088
AT5G59880.1	KRH34983	AT1G35670.1	19130088
AT5G59880.1	KRH34984	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36708	Soybean	mitochondrion	99.28	99.28
KRH19714	Soybean	nucleus	90.65	90.65
PGSC0003DMT400008913	Potato	cytosol	85.61	86.86
Solyc06g005360.2.1	Tomato	cytosol, extracellular, nucleus	85.61	86.86
AT5G59890.1	Thale cress	cytosol	83.45	83.45
Bra002522.1-P	Field mustard	cytosol	83.45	83.45
KRH32309	Soybean	cytosol, nucleus	86.33	83.33
CDY31586	Canola	cytosol	79.14	83.33
AT5G59880.1	Thale cress	cytosol	82.01	82.01
Bra006686.1-P	Field mustard	cytosol	77.7	81.82
CDX71067	Canola	cytosol	77.7	81.82
GSMUA_Achr10P...	Banana	cytosol	76.98	81.06
GSMUA_Achr6P15320_001	Banana	cytosol	74.82	78.79
Bra020277.1-P	Field mustard	cytosol	83.45	77.85
EER95084	Sorghum	cytosol	76.98	76.98
Os05t0113400-01	Rice	cytosol, extracellular, plastid	76.26	76.81
CDY09242	Canola	cytosol	83.45	75.82
Bra006687.1-P	Field mustard	cytosol	83.45	75.82
AT3G46010.2	Thale cress	cytosol	81.3	75.33
CDX88730	Canola	cytosol	83.45	75.32
KRH27939	Soybean	cytosol	74.1	75.18
Bra020276.1-P	Field mustard	cytosol	82.73	75.16
EES17589	Sorghum	cytosol	74.82	74.82
HORVU0Hr1G000200.1	Barley	cytosol	74.82	74.82
KRH41156	Soybean	cytosol	69.78	74.62
KRH77527	Soybean	cytosol	73.38	74.45
KRG91521	Soybean	cytosol	71.94	72.99
KRH35309	Soybean	cytosol	71.94	72.99
Zm00001d035629_P001	Maize	cytosol	72.66	72.66
Zm00001d035625_P001	Maize	cytosol	67.63	71.76
AT3G46000.2	Thale cress	cytosol	79.86	71.15
CDX71068	Canola	cytosol	83.45	70.73
GSMUA_Achr6P33310_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	81.3	68.07
Bra038266.1-P	Field mustard	cytosol	81.3	67.66
CDX99133	Canola	cytosol, plastid	81.3	67.66
GSMUA_Achr9P04050_001	Banana	endoplasmic reticulum, extracellular	80.58	67.47
CDX86048	Canola	cytosol, plastid	80.58	67.07
VIT_08s0040g03360.t01	Wine grape	plastid	87.77	64.55
KRH51874	Soybean	cytosol	52.52	62.39
GSMUA_Achr10P...	Banana	endoplasmic reticulum, vacuole	82.01	61.62
KRH59855	Soybean	endoplasmic reticulum, extracellular	74.82	61.54
VIT_11s0103g00260.t01	Wine grape	cytosol	51.08	60.17
AT3G45990.1	Thale cress	cytosol	57.55	60.15
VIT_10s0092g00330.t01	Wine grape	cytosol	38.85	59.34
KRH29274	Soybean	cytosol	55.4	58.33
CDX88731	Canola	cytosol, plastid	82.73	57.79
KRH51402	Soybean	cytosol	58.99	57.34
KRG92420	Soybean	cytosol	59.71	56.08
KRH24296	Soybean	cytosol, plastid	57.55	55.94
KRG95660	Soybean	cytosol	58.27	55.48
KRH67374	Soybean	cytosol	57.55	54.79
KRH34385	Soybean	cytosol	58.27	54.73
GSMUA_Achr10P...	Banana	endoplasmic reticulum	80.58	51.61
CDX80216	Canola	cytosol	84.17	46.43
GSMUA_Achr2P16220_001	Banana	cytosol	81.3	40.65

Protein Annotations

EntrezGene:100305514	MapMan:20.2.2.8	Gene3D:3.40.20.10	EMBL:ACUP02009231	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf
InterPro:ADF/Cofilin	EMBL:BT089144	UniProt:C6SVF1	EnsemblPlantsGene:GLYMA_15G125300	GO:GO:0003674	GO:GO:0003779
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856
GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030042	InterPro:IPR002108
InterPro:IPR029006	EMBL:KC691286	EnsemblPlants:KRH11708	ProteinID:KRH11708	ProteinID:KRH11708.1	PFAM:PF00241
PFscan:PS51263	PANTHER:PTHR11913	PANTHER:PTHR11913:SF50	SMART:SM00102	SUPFAM:SSF55753	UniParc:UPI0001B15662

Description

hypothetical protein

Coordinates

chr15:+:9944915..9945451

Molecular Weight (calculated)

15979.0 Da

IEP (calculated)

6.532

GRAVY (calculated)

-0.484

Length

139 amino acids

Sequence
(BLAST)

001: MANAASGMAV HDDCKLRFLE LKAKRTHRFI VFKIEEQQKQ VIVEKLGEPA QGYEDFTASL PADECRYAVY DFEYLTEGNV PKSRIFFIAW SPDTSRVRSK
101: MIYASSKDRF KRELDGIQVE LQATDPTEMG LDVFKSRAN

Best Arabidopsis Sequence Match ( AT5G59880.1 )
(BLAST)

001: MANAASGMAV HDDCKLKFME LKTKRTHRFI IYKIEELQKQ VIVEKIGEPG QTHEDLAASL PADECRYAIF DFDFVSSEGV PRSRIFFVAW SPDTARVRSK
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVFKSRAN

Arabidopsis Description

ADF3Actin-depolymerizing factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.