CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G59880.1	KRG91803	AT1G35670.1	19130088
AT5G59880.1	KRH34983	AT1G35670.1	19130088
AT5G59880.1	KRH34984	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19714	Soybean	nucleus	92.36	95.68
KRH11708	Soybean	mitochondrion	83.33	86.33
KRH36708	Soybean	mitochondrion	82.64	85.61
CDY31586	Canola	cytosol	77.08	84.09
Solyc06g005360.2.1	Tomato	cytosol, extracellular, nucleus	79.86	83.94
PGSC0003DMT400008913	Potato	cytosol	79.86	83.94
Bra002522.1-P	Field mustard	cytosol	80.56	83.45
GSMUA_Achr10P...	Banana	cytosol	76.39	83.33
Os05t0113400-01	Rice	cytosol, extracellular, plastid	79.17	82.61
AT5G59890.1	Thale cress	cytosol	79.17	82.01
Bra006686.1-P	Field mustard	cytosol	74.31	81.06
CDX71067	Canola	cytosol	74.31	81.06
GSMUA_Achr6P15320_001	Banana	cytosol	74.31	81.06
EER95084	Sorghum	cytosol	77.08	79.86
Bra020277.1-P	Field mustard	cytosol	81.94	79.19
Bra006687.1-P	Field mustard	cytosol	82.64	77.78
AT5G59880.1	Thale cress	cytosol	75.0	77.7
CDX88730	Canola	cytosol	82.64	77.27
HORVU0Hr1G000200.1	Barley	cytosol	74.31	76.98
AT3G46010.2	Thale cress	cytosol	79.86	76.67
KRH35309	Soybean	cytosol	72.92	76.64
KRG91521	Soybean	cytosol	72.92	76.64
CDY09242	Canola	cytosol	80.56	75.82
EES17589	Sorghum	cytosol	72.92	75.54
KRH41156	Soybean	cytosol	68.06	75.38
KRH27939	Soybean	cytosol	71.53	75.18
Bra020276.1-P	Field mustard	cytosol	79.86	75.16
KRH77527	Soybean	cytosol	70.83	74.45
Zm00001d035629_P001	Maize	cytosol	71.53	74.1
AT3G46000.2	Thale cress	cytosol	79.86	73.72
Zm00001d035625_P001	Maize	cytosol	66.67	73.28
CDX71068	Canola	cytosol	82.64	72.56
Bra038266.1-P	Field mustard	cytosol	81.25	70.06
CDX99133	Canola	cytosol, plastid	81.25	70.06
GSMUA_Achr9P04050_001	Banana	endoplasmic reticulum, extracellular	80.56	69.88
CDX86048	Canola	cytosol, plastid	80.56	69.46
GSMUA_Achr6P33310_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	79.17	68.67
KRH51874	Soybean	cytosol	54.86	67.52
VIT_08s0040g03360.t01	Wine grape	plastid	84.72	64.55
GSMUA_Achr10P...	Banana	endoplasmic reticulum, vacuole	82.64	64.32
KRH29274	Soybean	cytosol	58.33	63.64
KRH59855	Soybean	endoplasmic reticulum, extracellular	72.22	61.54
VIT_11s0103g00260.t01	Wine grape	cytosol	50.0	61.02
VIT_10s0092g00330.t01	Wine grape	cytosol	38.19	60.44
KRH67374	Soybean	cytosol	61.11	60.27
KRG95660	Soybean	cytosol	61.11	60.27
KRH24296	Soybean	cytosol, plastid	59.72	60.14
KRH51402	Soybean	cytosol	59.72	60.14
KRG92420	Soybean	cytosol	61.81	60.14
AT3G45990.1	Thale cress	cytosol	54.86	59.4
KRH34385	Soybean	cytosol	60.42	58.78
CDX88731	Canola	cytosol, plastid	78.47	56.78
GSMUA_Achr10P...	Banana	endoplasmic reticulum	80.56	53.46
CDX80216	Canola	cytosol	81.25	46.43
GSMUA_Achr2P16220_001	Banana	cytosol	81.94	42.45

Protein Annotations

MapMan:20.2.2.8	Gene3D:3.40.20.10	EMBL:ACUP02006111	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin
EnsemblPlantsGene:GLYMA_10G044000	GO:GO:0003674	GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629
GO:GO:0016043	GO:GO:0030042	UniProt:I1L8L2	InterPro:IPR002108	InterPro:IPR029006	EnsemblPlants:KRH32309
ProteinID:KRH32309	ProteinID:KRH32309.1	PFAM:PF00241	PFscan:PS51263	PANTHER:PTHR11913	PANTHER:PTHR11913:SF50
SMART:SM00102	SUPFAM:SSF55753	UniParc:UPI00023C9BCE	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:3949777..3950709

Molecular Weight (calculated)

16571.7 Da

IEP (calculated)

5.357

GRAVY (calculated)

-0.432

Length

144 amino acids

Sequence
(BLAST)

001: MCEILQANAA SGMAVHDECK LKFLELKAKR TYRYIVFKIE EKSKQVIVEK LGDPANGYDE FAASLPADEC RYAVYDFDFV TEENCQKSRI FFIAWSPDTS
101: RVRSKMIYAS SKDRFKRELD GIQIELQATD PTEMGLDVFK SRAN

Best Arabidopsis Sequence Match ( AT3G46010.2 )
(BLAST)

001: MVSSIFHLLS RSANAASGMA VHDDCKLRFL ELKAKRTHRF IVYKIEEKQK QVVVEKVGQP IQTYEEFAAC LPADECRYAI YDFDFVTAEN CQKSKIFFIA
101: WCPDIAKVRS KMIYASSKDR FKRELDGIQV ELQATDPTEM DLDVFRSRAN

Arabidopsis Description

ADF1Actin depolymerizing factor 1 [Source:UniProtKB/TrEMBL;Acc:A8MR09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.