Factsheet for PGSC0003DMT400000464

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g094400.2.1	Tomato	unclear	97.81	97.81
PGSC0003DMT400026582	Potato	mitochondrion	89.05	87.77
GSMUA_Achr8P11370_001	Banana	cytosol	62.77	77.48
VIT_16s0050g00220.t01	Wine grape	cytosol	72.99	75.76
PGSC0003DMT400037205	Potato	cytosol	75.18	75.18
GSMUA_Achr11P...	Banana	cytosol	71.53	74.24
PGSC0003DMT400076911	Potato	cytosol	73.72	73.19
GSMUA_AchrUn_...	Banana	cytosol	69.34	71.97
TraesCS2B01G429500.1	Wheat	cytosol	72.99	71.94
TraesCS6D01G229200.1	Wheat	cytosol	72.26	71.22
TraesCS6A01G247000.1	Wheat	cytosol	72.26	71.22
EES12628	Sorghum	cytosol	71.53	70.5
Zm00001d051388_P001	Maize	cytosol	71.53	70.5
Os04t0555700-01	Rice	plasma membrane	71.53	70.5
GSMUA_Achr11P...	Banana	cytosol	67.88	70.45
EES05762	Sorghum	cytosol	70.8	69.78
GSMUA_Achr1P00290_001	Banana	cytosol	67.15	69.7
Zm00001d017516_P001	Maize	cytosol	70.07	69.06
PGSC0003DMT400023061	Potato	cytosol	69.34	68.35
PGSC0003DMT400028567	Potato	cytosol	68.61	67.63
TraesCS6B01G277600.1	Wheat	cytosol	70.8	66.9
PGSC0003DMT400071339	Potato	cytosol	69.34	66.43
PGSC0003DMT400087280	Potato	cytosol	65.69	66.18
PGSC0003DMT400008913	Potato	cytosol	64.96	64.96
PGSC0003DMT400044218	Potato	cytosol	58.39	55.17
PGSC0003DMT400015865	Potato	cytosol	56.2	53.85
GSMUA_Achr5P12270_001	Banana	plastid, vacuole	73.72	50.25
PGSC0003DMT400026656	Potato	mitochondrion	59.12	44.75
GSMUA_Achr2P11510_001	Banana	cytosol	72.99	43.86
GSMUA_Achr2P18590_001	Banana	cytosol	72.26	43.61
VIT_15s0046g03040.t01	Wine grape	cytosol	78.83	42.19

Protein Annotations

EntrezGene:102586653	MapMan:20.2.2.8	Gene3D:3.40.20.10	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin
GO:GO:0003674	GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043
GO:GO:0030042	InterPro:IPR002108	InterPro:IPR029006	UniProt:M0ZGS3	PFAM:PF00241	EnsemblPlantsGene:PGSC0003DMG400000158
PGSC:PGSC0003DMG400000158	EnsemblPlants:PGSC0003DMT400000464	PFscan:PS51263	PANTHER:PTHR11913	PANTHER:PTHR11913:SF30	SMART:SM00102
SUPFAM:SSF55753	UniParc:UPI0002958E19	RefSeq:XP_006339546.1	SEG:seg	:	:

Description

Actin-depolymerizing factor 12 [Source:PGSC_GENE;Acc:PGSC0003DMG400000158]

Coordinates

chr1:-:71963933..71965552

Molecular Weight (calculated)

15645.5 Da

IEP (calculated)

6.519

GRAVY (calculated)

-0.449

Length

137 amino acids

Sequence
(BLAST)

001: MANSASGIAV SDECKLKFME LKAKRNHRYI VFKIDGQQVV VEKVGGQAET HDDFANSLPP NECRYAVFDY DFTTNENVQK SKIFFVAWSP ETARVRSKML
101: YASSKDRFRR EFDGVQVELQ ATDPSEMSLD TFVCRAL

Best Arabidopsis Sequence Match ( AT5G52360.1 )
(BLAST)

001: MANAASGMAV EDECKLKFLE LKAKRNYRFI IFRIDGQQVV VEKLGSPQEN YDDFTNYLPP NECRYAVYDF DFTTAENIQK SKIFFIAWSP DSSRVRMKMV
101: YASSKDRFKR ELDGIQVELQ ATDPSEMSLD IIKSRAL

Arabidopsis Description

ADF12ADF10 [Source:UniProtKB/TrEMBL;Acc:A0A178UBW2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.