Factsheet for PGSC0003DMT400026656

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400023026
PGSC0003DMT400049429

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31200.1	PGSC0003DMT400023026	AT3G12110.1	21798944
AT2G31200.1	PGSC0003DMT400049429	AT3G12110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g072590.2.1	Tomato	cytosol	76.24	95.17
VIT_07s0005g03310.t01	Wine grape	cytosol	66.3	83.92
KRH67374	Soybean	cytosol	64.64	80.14
KRG95660	Soybean	cytosol	64.09	79.45
AT2G31200.1	Thale cress	cytosol	61.33	76.03
PGSC0003DMT400044218	Potato	cytosol	60.77	75.86
Bra018268.1-P	Field mustard	mitochondrion	60.77	75.34
CDY10786	Canola	cytosol	60.77	75.34
CDY24750	Canola	cytosol	59.67	73.97
Os03t0780400-01	Rice	plastid	59.12	73.79
Os12t0628100-01	Rice	extracellular	59.12	73.79
EER90794	Sorghum	cytosol	58.01	72.41
TraesCS5D01G423800.1	Wheat	golgi	58.01	72.41
Zm00001d034326_P001	Maize	cytosol	52.49	71.97
Zm00001d013141_P001	Maize	cytosol	57.46	71.72
TraesCS5A01G416100.1	Wheat	cytosol	57.46	71.72
PGSC0003DMT400023061	Potato	cytosol	48.62	63.31
PGSC0003DMT400028567	Potato	cytosol	47.51	61.87
GSMUA_Achr1P09160_001	Banana	cytosol	66.3	61.54
TraesCS1B01G197600.1	Wheat	cytosol	50.83	61.33
PGSC0003DMT400087280	Potato	cytosol	45.86	61.03
TraesCS1D01G186600.1	Wheat	cytosol	50.83	60.93
PGSC0003DMT400076911	Potato	cytosol	46.41	60.87
PGSC0003DMT400071339	Potato	cytosol	48.07	60.84
PGSC0003DMT400037205	Potato	cytosol	45.86	60.58
Os10t0521100-01	Rice	cytosol	49.72	59.6
PGSC0003DMT400008913	Potato	cytosol	44.75	59.12
PGSC0003DMT400000464	Potato	cytosol	44.75	59.12
HORVU1Hr1G048450.4	Barley	cytosol	51.38	58.86
TraesCS1A01G183100.2	Wheat	cytosol	50.28	58.71
PGSC0003DMT400015865	Potato	cytosol	45.3	57.34
PGSC0003DMT400026582	Potato	mitochondrion	43.65	56.83
HORVU5Hr1G100770.1	Barley	cytosol, plastid	58.56	53.0
KXG39048	Sorghum	plastid	49.72	47.62
Zm00001d029656_P003	Maize	cytosol	49.72	42.86
Zm00001d034024_P001	Maize	cytosol, plastid	35.91	42.21
Os07t0297500-00	Rice	cytosol	35.91	28.02

Protein Annotations

EntrezGene:102599827	MapMan:20.2.2.8	Gene3D:3.40.20.10	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin
GO:GO:0003674	GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043
GO:GO:0030042	InterPro:IPR002108	InterPro:IPR029006	UniProt:M1ANI8	PFAM:PF00241	EnsemblPlantsGene:PGSC0003DMG400010300
PGSC:PGSC0003DMG400010300	EnsemblPlants:PGSC0003DMT400026656	PFscan:PS51263	PANTHER:PTHR11913	PANTHER:PTHR11913:SF21	SMART:SM00102
SUPFAM:SSF55753	UniParc:UPI000296E875	:	:	:	:

Description

Actin-depolymerizing factor [Source:PGSC_GENE;Acc:PGSC0003DMG400010300]

Coordinates

chr9:+:50186771..50189462

Molecular Weight (calculated)

21028.8 Da

IEP (calculated)

7.060

GRAVY (calculated)

-0.556

Length

181 amino acids

Sequence
(BLAST)

001: MLKRNAWSNW RLASQKVWVA FNQRTDPELR SIDTGLDLFF EFQPNASSGM GVADHGKNAF LELKRKKVHR YVIFKIDEMK KEVVVEKTGS PAESFDDFTA
101: SLPENDCRYA VYDFDFVTSE NCQKSKIFFV HWSPATSRIR AKMLYATSKD AFKRELDGFH YEIQATDPTE VDLEVLKDRA H

Best Arabidopsis Sequence Match ( AT2G31200.1 )
(BLAST)

001: MSFRGLSRPN AISGMGVADE SKTTFLELQR KKTHRYVVFK IDESKKEVVV EKTGNPTESY DDFLASLPDN DCRYAVYDFD FVTSENCQKS KIFFFAWSPS
101: TSGIRAKVLY STSKDQLSRE LQGIHYEIQA TDPTEVDLEV LRERAN

Arabidopsis Description

ADF6Actin-depolymerizing factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.