Factsheet for Os12t0628100-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

extracellular: 18372294

msms PMID: 18372294 doi

T Aki, M Shigyo, R Nakano, T Yoneyama, S Yanagisawa

Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657 Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P24750_001	Banana	cytosol	62.76	81.98
VIT_05s0049g00980.t01	Wine grape	cytosol	78.62	79.72
VIT_07s0005g03310.t01	Wine grape	cytosol	77.93	79.02
KRH51874	Soybean	cytosol	63.45	78.63
KRH34385	Soybean	cytosol	76.55	75.0
Solyc09g072590.2.1	Tomato	cytosol	74.48	74.48
Os03t0780400-01	Rice	plastid	74.48	74.48
KRG92420	Soybean	cytosol	75.17	73.65
KRH67374	Soybean	cytosol	73.79	73.29
AT2G31200.1	Thale cress	cytosol	73.1	72.6
KRG95660	Soybean	cytosol	73.1	72.6
Bra018268.1-P	Field mustard	mitochondrion	71.72	71.23
CDY10786	Canola	cytosol	71.72	71.23
PGSC0003DMT400044218	Potato	cytosol	71.03	71.03
Solyc09g090110.2.1	Tomato	cytosol	71.03	71.03
CDY24750	Canola	cytosol	70.34	69.86
Solyc09g072600.1.1	Tomato	cytosol	22.76	67.35
Os05t0113400-01	Rice	cytosol, extracellular, plastid	57.93	60.87
PGSC0003DMT400026656	Potato	mitochondrion	73.79	59.12
Os10t0521100-01	Rice	cytosol	60.0	57.62
Os07t0484200-01	Rice	plasma membrane	55.17	57.55
Os04t0555700-01	Rice	plasma membrane	53.1	55.4
Os03t0243100-01	Rice	cytosol	53.1	53.85
Os03t0820600-01	Rice	cytosol, extracellular, plastid	48.28	50.36
Os03t0820500-01	Rice	plastid	46.9	45.33
Os07t0297500-00	Rice	cytosol	40.69	25.43

Protein Annotations

MapMan:20.2.2.8	Gene3D:3.40.20.10	EntrezGene:4352848	ProteinID:ABA99516.1	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf
InterPro:ADF/Cofilin	EMBL:AK121150	ProteinID:BAF30346.1	ProteinID:BAT18194.1	ProteinID:EAZ21297.1	GO:GO:0003674
GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030042
InterPro:IPR002108	InterPro:IPR029006	EnsemblPlantsGene:Os12g0628100	EnsemblPlants:Os12t0628100-01	PFAM:PF00241	PFscan:PS51263
PANTHER:PTHR11913	PANTHER:PTHR11913:SF20	UniProt:Q2QLT8	SMART:SM00102	SUPFAM:SSF55753	UniParc:UPI0000680BA7
RefSeq:XP_015618885.1	:	:	:	:	:

Description

actin depolymerizing factor 11Similar to Actin-depolymerizing factor 6 (ADF-6) (AtADF6). (Os12t0628100-01)

Coordinates

chr12:-:26888810..26890166

Molecular Weight (calculated)

16824.9 Da

IEP (calculated)

6.271

GRAVY (calculated)

-0.504

Length

145 amino acids

Sequence
(BLAST)

001: MAFVRSRANA SSGIGVAAEC KQTFLELQRK KSHRYVIFKI DDKCKEVVVE KTGSSTESFD DFMDSLPESD CRYAIYDFDF VTEENCQKSK IFFVAWSPSV
101: SRIRAKMLYA TSKERFRREL DGVHYEIQAT DPSELDIELL RERAH

Best Arabidopsis Sequence Match ( AT2G31200.1 )
(BLAST)

001: MSFRGLSRPN AISGMGVADE SKTTFLELQR KKTHRYVVFK IDESKKEVVV EKTGNPTESY DDFLASLPDN DCRYAVYDFD FVTSENCQKS KIFFFAWSPS
101: TSGIRAKVLY STSKDQLSRE LQGIHYEIQA TDPTEVDLEV LRERAN

Arabidopsis Description

ADF6Actin-depolymerizing factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.