Factsheet for Os03t0820600-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 18372294
plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18372294 doi

T Aki, M Shigyo, R Nakano, T Yoneyama, S Yanagisawa

Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657 Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37255	Sorghum	cytosol	74.82	74.82
Zm00001d012966_P001	Maize	plastid	74.82	74.82
Zm00001d034644_P001	Maize	plastid	74.82	74.82
TraesCS5A01G478900.1	Wheat	golgi, nucleus, plastid, unclear	69.06	69.57
TraesCS5D01G492400.1	Wheat	cytosol	69.06	69.57
Os04t0555700-01	Rice	plasma membrane	57.55	57.55
HORVU5Hr1G113010.1	Barley	cytosol, plastid	60.43	57.14
Os07t0484200-01	Rice	plasma membrane	53.96	53.96
Os05t0113400-01	Rice	cytosol, extracellular, plastid	53.24	53.62
Os12t0628100-01	Rice	extracellular	50.36	48.28
Os03t0820500-01	Rice	plastid	49.64	46.0
Os03t0780400-01	Rice	plastid	47.48	45.52
Os03t0243100-01	Rice	cytosol	38.13	37.06
Os10t0521100-01	Rice	cytosol	39.57	36.42
Os07t0297500-00	Rice	cytosol	33.81	20.26

Protein Annotations

MapMan:20.2.2.8	Gene3D:3.40.20.10	EntrezGene:4334595	ProteinID:AAO65864.1	ProteinID:ABF99588.1	InterPro:ADF-H
InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin	EMBL:AK058941	ProteinID:BAF13635.1	ProteinID:BAS87084.1	GO:GO:0003674
GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0006950	GO:GO:0006952	GO:GO:0008150	GO:GO:0009987
GO:GO:0015629	GO:GO:0016043	GO:GO:0030042	InterPro:IPR002108	InterPro:IPR029006	EnsemblPlantsGene:Os03g0820600
EnsemblPlants:Os03t0820600-01	PFAM:PF00241	PFscan:PS51263	PANTHER:PTHR11913	PANTHER:PTHR11913:SF50	UniProt:Q84TB3
SMART:SM00102	SUPFAM:SSF55753	UniParc:UPI00000560EC	RefSeq:XP_015632174.1	:	:

Description

actin depolymerizing factor 4Similar to Actin-depolymerizing factor 3 (ADF 3) (ZmABP3) (ZmADF3). (Os03t0820600-01);Similar to cDNA clone:001-009-H02, full insert sequence. (Os03t0820600-02)

Coordinates

chr3:+:34431700..34434187

Molecular Weight (calculated)

15946.9 Da

IEP (calculated)

5.812

GRAVY (calculated)

-0.496

Length

139 amino acids

Sequence
(BLAST)

001: MANSSSGVAI HDDCKLKFNE LQSKRMHRFI TFMMDNKGKE IIVDKIGDRT TSYEDFTSSL PEGDCRFAIY DFDFLTAEDV PKSRIFYILW SPDNAKVRSK
101: MLYASSNERF KKELNGIQLE VQATDAGEIS LDALKDRVK

Best Arabidopsis Sequence Match ( AT5G59890.1 )
(BLAST)

001: MANAASGMAV HDDCKLRFLE LKAKRTHRFI VYKIEEKQKQ VIVEKVGEPI LTYEDFAASL PADECRYAIY DFDFVTAENC QKSKIFFIAW CPDVAKVRSK
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVLKSRVN

Arabidopsis Description

ADF4Actin-depolymerizing factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.