Factsheet for TraesCS5A01G478900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, plastid, nucleus

Predictor Summary:

cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, nucleus, plastid, unclear
Any Predictor:	cytoskeleton, cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

plastid: 22160430
golgi: 25769308
unclear: 25769308
nucleus: 28628250

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 28628250 doi

T Bonnot, E Bancel, D Alvarez, M Davanture, J Boudet, M Pailloux, M Zivy, C Ravel, P Martre

LIMOS, CNRS, Université Blaise Pascal, Aubière, 63173, France., UMR GDEC, INRA, Université Clermont Auvergne, 5 chemin de Beaulieu, Clermont-Ferrand, 63039, France., UMR GQE, INRA, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Gif-sur-Yvette, 91190, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G492400.1	Wheat	cytosol	100.0	100.0
HORVU5Hr1G113010.1	Barley	cytosol, plastid	85.51	80.27
Os03t0820600-01	Rice	cytosol, extracellular, plastid	69.57	69.06
KXG37255	Sorghum	cytosol	65.94	65.47
Zm00001d012966_P001	Maize	plastid	64.49	64.03
Zm00001d034644_P001	Maize	plastid	64.49	64.03
TraesCS6A01G247000.1	Wheat	cytosol	55.8	55.4
TraesCS2A01G227300.1	Wheat	cytosol	54.35	53.96
TraesCS5A01G478800.1	Wheat	cytosol	48.55	45.58
TraesCS5A01G416100.1	Wheat	cytosol	47.83	45.52
TraesCS4A01G071400.1	Wheat	cytosol	42.75	41.26
TraesCS1A01G183100.2	Wheat	cytosol	39.13	34.84
TraesCS5A01G478500.1	Wheat	mitochondrion	44.2	30.5

Protein Annotations

MapMan:20.2.2.8	Gene3D:3.40.20.10	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin	GO:GO:0003674
GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030042
InterPro:IPR002108	InterPro:IPR029006	PFAM:PF00241	PFscan:PS51263	PANTHER:PTHR11913	PANTHER:PTHR11913:SF50
SMART:SM00102	SUPFAM:SSF55753	EnsemblPlantsGene:TraesCS5A01G478900	EnsemblPlants:TraesCS5A01G478900.1	TIGR:cd11286	:

Description

No Description!

Coordinates

chr5A:+:651983109..651984583

Molecular Weight (calculated)

16084.9 Da

IEP (calculated)

5.739

GRAVY (calculated)

-0.662

Length

138 amino acids

Sequence
(BLAST)

001: MANASSGAGI HDDCKLRFVE LKSKRMHRFI TYRLENQKEV IVDQTGEREA TYEDFTKTLP ENDCRFAVFD FDFTTPEDVP KSRIFYIFWS PDTAKVRSKM
101: TYASTNEKFK RTLDGIQIEM QATDPSEISL DVIKERAH

Best Arabidopsis Sequence Match ( AT1G01750.1 )
(BLAST)

001: MANSASGMHV SDECKLKFLE LKAKRNYRFI VFKIDEKAQQ VMIDKLGNPE ETYEDFTRSI PEDECRYAVY DYDFTTPENC QKSKIFFIAW SPDTSRVRSK
101: MLYASSKDRF KRELDGIQVE LQATDPSEMS LDIIKGRVNL

Arabidopsis Description

ADF11actin depolymerizing factor 11 [Source:TAIR;Acc:AT1G01750]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.