Factsheet for Zm00001d034644_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 16377746
extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 16377746 doi

J Zhu, S Chen, S Alvarez, VS Asirvatham, DP Schachtman, Y Wu, RE Sharp

Division of Plant Sciences, University of Missouri, Columbia, Missouri 65211, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012966_P001	Maize	plastid	98.56	98.56
KXG37255	Sorghum	cytosol	96.4	96.4
Os03t0820600-01	Rice	cytosol, extracellular, plastid	74.82	74.82
TraesCS5A01G478900.1	Wheat	golgi, nucleus, plastid, unclear	64.03	64.49
TraesCS5D01G492400.1	Wheat	cytosol	64.03	64.49
Zm00001d035625_P001	Maize	cytosol	56.12	59.54
Zm00001d035629_P001	Maize	cytosol	58.99	58.99
Zm00001d051388_P001	Maize	cytosol	57.55	57.55
Zm00001d017516_P001	Maize	cytosol	56.83	56.83
HORVU5Hr1G113010.1	Barley	cytosol, plastid	55.4	52.38
Zm00001d034326_P001	Maize	cytosol	45.32	47.73
Zm00001d013141_P001	Maize	cytosol	49.64	47.59
Zm00001d034643_P001	Maize	cytosol	48.92	45.64
Zm00001d028392_P001	Maize	cytosol	43.88	42.66
Zm00001d047942_P001	Maize	mitochondrion	42.45	34.3
Zm00001d034024_P001	Maize	cytosol, plastid	32.37	29.22
Zm00001d029656_P003	Maize	cytosol	41.73	27.62
Zm00001d002714_P003	Maize	cytosol	28.78	23.26

Protein Annotations

MapMan:20.2.2.8	Gene3D:3.40.20.10	EntrezGene:542445	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin
UniProt:B4FEJ6	EMBL:BT035534	EMBL:BT087372	EMBL:BT088298	EMBL:EU952653	EMBL:EU958822
EMBL:EU962487	EMBL:EU973761	GO:GO:0003674	GO:GO:0003779	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0008150
GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030042	InterPro:IPR002108	InterPro:IPR029006
ProteinID:ONM10913.1	PFAM:PF00241	PFscan:PS51263	PANTHER:PTHR11913	PANTHER:PTHR11913:SF50	UniProt:Q41764
SMART:SM00102	SUPFAM:SSF55753	UniParc:UPI0000125532	EMBL:X97726	EnsemblPlantsGene:Zm00001d034644	EnsemblPlants:Zm00001d034644_P001
EnsemblPlants:Zm00001d034644_T001	:	:	:	:	:

Description

actin depolymerizing factor3 actin depolymerizing factor3

Coordinates

chr1:+:298705539..298708107

Molecular Weight (calculated)

15900.7 Da

IEP (calculated)

5.287

GRAVY (calculated)

-0.480

Length

139 amino acids

Sequence
(BLAST)

001: MANARSGVAV NDECMLKFGE LQSKRLHRFI TFKMDDKFKE IVVDQVGDRA TSYDDFTNSL PENDCRYAIY DFDFVTAEDV QKSRIFYILW SPSSAKVKSK
101: MLYASSNQKF KSGLNGIQVE LQATDASEIS LDEIKDRAR

Best Arabidopsis Sequence Match ( AT1G01750.1 )
(BLAST)

001: MANSASGMHV SDECKLKFLE LKAKRNYRFI VFKIDEKAQQ VMIDKLGNPE ETYEDFTRSI PEDECRYAVY DYDFTTPENC QKSKIFFIAW SPDTSRVRSK
101: MLYASSKDRF KRELDGIQVE LQATDPSEMS LDIIKGRVNL

Arabidopsis Description

ADF11actin depolymerizing factor 11 [Source:TAIR;Acc:AT1G01750]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.