Factsheet for TraesCS5D01G423800.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

golgi: 23128297
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G416100.1	Wheat	cytosol	98.62	98.62
Os03t0780400-01	Rice	plastid	94.48	94.48
Zm00001d013141_P001	Maize	cytosol	91.72	91.72
EER90794	Sorghum	cytosol	91.72	91.72
Zm00001d034326_P001	Maize	cytosol	80.69	88.64
GSMUA_Achr2P17320_001	Banana	cytosol	80.0	80.0
GSMUA_Achr7P16650_001	Banana	cytosol	52.41	79.17
GSMUA_Achr7P00900_001	Banana	cytosol	68.97	75.76
VIT_05s0049g00980.t01	Wine grape	cytosol	73.79	74.83
VIT_07s0005g03310.t01	Wine grape	cytosol	73.1	74.13
KRH51874	Soybean	cytosol	59.31	73.5
Solyc09g072590.2.1	Tomato	cytosol	73.1	73.1
HORVU5Hr1G100770.1	Barley	cytosol, plastid	100.0	72.5
GSMUA_Achr2P13120_001	Banana	cytosol	72.41	72.41
AT2G31200.1	Thale cress	cytosol	71.72	71.23
KRH34385	Soybean	cytosol	72.41	70.95
Bra018268.1-P	Field mustard	mitochondrion	71.03	70.55
CDY10786	Canola	cytosol	71.03	70.55
KRH67374	Soybean	cytosol	71.03	70.55
KRG92420	Soybean	cytosol	71.72	70.27
CDY24750	Canola	cytosol	70.34	69.86
KRG95660	Soybean	cytosol	70.34	69.86
PGSC0003DMT400044218	Potato	cytosol	68.97	68.97
Solyc09g090110.2.1	Tomato	cytosol	68.97	68.97
Solyc09g072600.1.1	Tomato	cytosol	20.69	61.22
TraesCS6D01G229200.1	Wheat	cytosol	57.24	59.71
PGSC0003DMT400026656	Potato	mitochondrion	72.41	58.01
Zm00001d034024_P001	Maize	cytosol, plastid	57.24	53.9
TraesCS1D01G186600.1	Wheat	cytosol	54.48	52.32
TraesCS2D01G235200.1	Wheat	cytosol	49.66	51.8
TraesCS5D01G492400.1	Wheat	cytosol	46.21	48.55
TraesCS4D01G228100.1	Wheat	cytosol	47.59	48.25
TraesCS5D01G492300.1	Wheat	cytosol	41.38	40.82
TraesCS5D01G491900.1	Wheat	plastid	42.07	25.96

Protein Annotations

MapMan:20.2.2.8	Gene3D:3.40.20.10	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin	GO:GO:0003674
GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030042
InterPro:IPR002108	InterPro:IPR029006	PFAM:PF00241	PFscan:PS51263	PANTHER:PTHR11913	PANTHER:PTHR11913:SF26
SMART:SM00102	SUPFAM:SSF55753	EnsemblPlantsGene:TraesCS5D01G423800	EnsemblPlants:TraesCS5D01G423800.1	TIGR:cd11286	:

Description

No Description!

Coordinates

chr5D:-:483645812..483648631

Molecular Weight (calculated)

16802.9 Da

IEP (calculated)

5.043

GRAVY (calculated)

-0.463

Length

145 amino acids

Sequence
(BLAST)

001: MAFMRTSSNA SSGMGVAPDI RETFLELQMK KAFRYVIFKI EEKQKQVVVE KTGATTESYD DFLACLPEND CRYALYDFDF VTGENVQKSK IFFIAWSPDT
101: SRIRAKMLYS TSKDRIKQEL DGFHYEIQAT DPTEVELDVL RDRAH

Best Arabidopsis Sequence Match ( AT2G31200.1 )
(BLAST)

001: MSFRGLSRPN AISGMGVADE SKTTFLELQR KKTHRYVVFK IDESKKEVVV EKTGNPTESY DDFLASLPDN DCRYAVYDFD FVTSENCQKS KIFFFAWSPS
101: TSGIRAKVLY STSKDQLSRE LQGIHYEIQA TDPTEVDLEV LRERAN

Arabidopsis Description

ADF6Actin-depolymerizing factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.