Factsheet for GSMUA_Achr8P16860_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400056033	Potato	cytosol	74.0	80.46
Solyc12g037980.1.1	Tomato	nucleus	73.78	80.23
KRH66446	Soybean	nucleus	75.26	80.0
KRH48882	Soybean	nucleus	75.05	79.6
Os08t0137200-01	Rice	nucleus	73.78	78.78
KRH41617	Soybean	nucleus	70.61	77.49
EER93001	Sorghum	cytosol	72.52	77.43
Zm00001d027326_P001	Maize	cytosol, extracellular, nucleus	72.52	77.43
TraesCS5D01G364800.1	Wheat	cytosol	72.09	76.98
TraesCS5B01G358500.1	Wheat	cytosol	72.09	76.98
TraesCS5A01G356000.1	Wheat	cytosol, nucleus	71.88	76.75
TraesCS6B01G189000.1	Wheat	cytosol	71.04	75.85
TraesCS6D01G149800.1	Wheat	cytosol	70.61	75.39
TraesCS6A01G162300.2	Wheat	cytosol	70.4	75.17
CDY26159	Canola	cytosol	68.92	73.76
CDX96721	Canola	cytosol	68.29	73.74
AT1G18450.1	Thale cress	cytosol	68.71	73.7
CDY19213	Canola	cytosol	68.71	73.53
CDX83847	Canola	cytosol	68.08	73.35
HORVU6Hr1G032610.8	Barley	cytosol	70.82	69.65
HORVU5Hr1G088030.1	Barley	plastid	72.3	67.32
VIT_17s0000g04010.t01	Wine grape	mitochondrion	59.62	63.8
GSMUA_Achr10P...	Banana	cytosol	26.43	45.45
GSMUA_Achr6P34320_001	Banana	cytosol	22.83	44.26
GSMUA_Achr2P08030_001	Banana	cytosol	32.56	44.0
GSMUA_Achr1P20200_001	Banana	cytosol	31.92	43.52
GSMUA_Achr6P25350_001	Banana	cytosol	34.67	43.5
GSMUA_Achr1P05990_001	Banana	plasma membrane	34.46	43.24
GSMUA_Achr8P16150_001	Banana	cytosol	34.46	43.24
GSMUA_Achr3P02960_001	Banana	cytosol	34.25	42.97
GSMUA_Achr11P...	Banana	cytosol	34.25	42.97
GSMUA_Achr9P03170_001	Banana	cytosol	34.04	42.82
GSMUA_Achr7P10410_001	Banana	cytosol	34.04	42.71
GSMUA_Achr2P16160_001	Banana	cytosol	34.04	42.71
GSMUA_Achr10P...	Banana	cytosol	29.6	42.55
GSMUA_Achr8P02660_001	Banana	cytosol	33.83	42.44
GSMUA_AchrUn_...	Banana	plasma membrane	33.62	42.18
GSMUA_Achr10P...	Banana	cytosol	33.62	42.18
GSMUA_Achr4P31250_001	Banana	cytosol	33.62	42.18
GSMUA_Achr9P08850_001	Banana	cytosol	31.08	42.12
GSMUA_Achr3P20240_001	Banana	cytosol	26.64	42.0
GSMUA_Achr11P...	Banana	cytosol	30.66	41.55
GSMUA_Achr5P29190_001	Banana	cytosol	30.44	41.38
GSMUA_Achr6P02480_001	Banana	cytosol	25.37	40.4
GSMUA_Achr2P15150_001	Banana	cytosol	29.81	40.4
GSMUA_Achr7P18630_001	Banana	cytosol	26.64	39.38
GSMUA_Achr10P...	Banana	cytosol	21.78	39.16
GSMUA_AchrUn_...	Banana	cytosol	25.37	30.85
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	17.55	28.52
GSMUA_Achr6P21120_001	Banana	cytosol	25.37	28.1
GSMUA_Achr9P07630_001	Banana	cytosol	24.95	27.57
GSMUA_Achr8P01270_001	Banana	cytosol	23.89	26.46
GSMUA_Achr2P05970_001	Banana	cytosol	9.51	25.42
GSMUA_Achr2P05960_001	Banana	cytosol	15.64	24.18
GSMUA_AchrUn_...	Banana	cytosol	21.99	23.91

Protein Annotations

MapMan:12.4.6.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	GO:GO:0000003	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0007275	GO:GO:0008150
GO:GO:0009628	GO:GO:0009791	GO:GO:0009987	GO:GO:0030154	GO:GO:0048235	GO:GO:0048574
EnsemblPlantsGene:GSMUA_Achr8G16860_001	EnsemblPlants:GSMUA_Achr8P16860_001	EnsemblPlants:GSMUA_Achr8T16860_001	UniProt:M0TR39	PFAM:PF00022	PRINTS:PR00190
PANTHER:PTHR11937	PANTHER:PTHR11937:SF274	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI00029602E1	SEG:seg

Description

Actin-related protein 4 [Source:GMGC_GENE;Acc:GSMUA_Achr8G16860_001]

Coordinates

chr8:-:14926762..14949037

Molecular Weight (calculated)

51923.8 Da

IEP (calculated)

4.917

GRAVY (calculated)

-0.197

Length

473 amino acids

Sequence
(BLAST)

001: MYGGGESVHS FFSQNPSPID LPRRSAPCEL IGSLFVFSLV DEVSAIVLDL GSYTCKAGYA GEDAPKAVFP SAVGSIYQAG ATDEVKHEKD SDSMYDSENA
101: DKIKTRKLYV GTQALGYRRD HMEVISPIKD GVVVDWDIVD NIWNHAFRER LLIDPKEHPM LLAEPSFNTP QQREKAAELM FESYKVPALF LAKNAVLTSF
201: ASGRATSLVV DSGGGSTTIA AVHDGYVLQK AVSTSPIGGE FLTDCMMKSL ESKGVMIKPR YSFKRKEIRP GEFQTVDLDI PNTTESYKLY SQRAIASDIK
301: ESVCRVPDTA FEESGYANVP MTPYELPDGQ TIEIGADRFK IPDVLFNPSL VQTIPGMESF AGSASVSGLP QMVIESINRC DADIKRELFS SILLAGGTAS
401: MLQLKERLEK ELMEEAPQAA RVKVLASGNS IERRFSVWIG GSILASLGSF QQLWFSKAEY EEHGVSNIQR KCP

Best Arabidopsis Sequence Match ( AT1G18450.1 )
(BLAST)

001: MYGGDEVSAI VVDLGSHTCK AGYAGEDAPK AVFPSVIGAV DGVEAMDVDV DSTKTNSNSE DSKTESEKEK SKRKLYVGSQ AMSYRRDHME VLSPIKDGIV
101: SDWDLVDNIW EHAFKSCLMI DPTEHPMLLA EPPLNTQQQR EKAAELMFEK YKVPALFMAK NPVLTSFATG RATSLVVDCG GGSTTISPVH DGYVLQKAVV
201: SSPLGGEFLT DCLLKSLESK GIKIRPRYSF KRKEVRAGEF QVEDVDIPDT TESYKLFCQR MIVGDIKDSI CRVPDTPYDD KSYSNIPTTS YELPDGQTLE
301: IGADRFKVPD VMFNPSIVQT IPGMEKYAEM IPSVRGLPHM VMESINKCDV DIRRELYSSI LLAGGTSSMQ QLKERLEKDL IEESPHSARV KVLASGNTTE
401: RRFSVWIGGS ILASLGSFQQ MWFSKSEYEE HGASYIQRKC P

Arabidopsis Description

ARP4Actin-related protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84M92]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.