Factsheet for VIT_17s0000g04010.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66446	Soybean	nucleus	68.33	67.87
KRH48882	Soybean	nucleus	67.65	67.04
PGSC0003DMT400056033	Potato	cytosol	64.25	65.29
Solyc12g037980.1.1	Tomato	nucleus	63.8	64.83
KRH41617	Soybean	nucleus	62.9	64.5
AT1G18450.1	Thale cress	cytosol	59.73	59.86
GSMUA_Achr8P16860_001	Banana	endoplasmic reticulum	63.8	59.62
CDX96721	Canola	cytosol	59.05	59.59
CDY26159	Canola	cytosol	58.82	58.82
CDX83847	Canola	cytosol	58.37	58.77
CDY19213	Canola	cytosol	58.6	58.6
TraesCS5B01G358500.1	Wheat	cytosol	58.37	58.24
TraesCS5D01G364800.1	Wheat	cytosol	58.37	58.24
TraesCS5A01G356000.1	Wheat	cytosol, nucleus	58.37	58.24
Os08t0137200-01	Rice	nucleus	58.37	58.24
EER93001	Sorghum	cytosol	57.92	57.79
Zm00001d027326_P001	Maize	cytosol, extracellular, nucleus	57.47	57.34
TraesCS6A01G162300.2	Wheat	cytosol	57.24	57.11
TraesCS6B01G189000.1	Wheat	cytosol	56.79	56.66
TraesCS6D01G149800.1	Wheat	cytosol	56.79	56.66
HORVU6Hr1G032610.8	Barley	cytosol	57.01	52.39
HORVU5Hr1G088030.1	Barley	plastid	57.92	50.39
VIT_13s0019g01240.t01	Wine grape	cytosol	29.41	34.48
VIT_11s0016g00770.t01	Wine grape	cytosol	29.19	34.31
VIT_12s0178g00200.t01	Wine grape	cytosol	29.19	34.22
VIT_06s0004g04570.t01	Wine grape	cytosol	28.96	34.04
VIT_08s0007g06520.t01	Wine grape	cytosol	28.96	33.95
VIT_04s0044g00580.t01	Wine grape	extracellular	29.19	28.04
VIT_14s0068g01630.t01	Wine grape	cytosol	21.95	24.94
VIT_13s0064g00730.t01	Wine grape	cytosol	19.23	23.55
VIT_01s0137g00280.t01	Wine grape	cytosol	22.17	22.9
VIT_11s0016g05490.t01	Wine grape	cytosol	19.68	20.09
VIT_00s0214g00170.t01	Wine grape	cytosol	6.79	17.14

Protein Annotations

ArrayExpress:VIT_17s0000g04010	EnsemblPlants:VIT_17s0000g04010.t01	EnsemblPlantsGene:VIT_17s0000g04010	Gene3D:3.30.420.40	InterPro:Actin	ncoils:Coil
PANTHER:PTHR11937	PANTHER:PTHR11937:SF274	PFAM:PF00022	PRINTS:PR00190	ProteinID:CBI15426.3	SEG:seg
SMART:SM00268	SUPFAM:SSF53067	TIGR:TC58574	UniParc:UPI0001BE0C52	UniProt:D7SIW5	MapMan:12.4.6.1

Description

actin-related protein 4 [Source:TAIR;Acc:AT1G18450](projected from arabidopsis_thaliana,AT1G18450)

Coordinates

chr17:+:4031362..4061473

Molecular Weight (calculated)

37985.5 Da

IEP (calculated)

5.299

GRAVY (calculated)

-0.164

Length

442 amino acids

Sequence
(BLAST)

001: MLIGLILRAS NATRGTIIXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
101: XXXXXXXXXX XXXXXXECLL VDLKEHPMLL AEPSSNTQQQ RERTAQLMFE KYEVPALFLA KNAVLTSFAS GRATSLVVDS GGGSTTVAPV HDGYVLQKAV
201: ASSPIGGEFL TECMMKSLES KGISIKPRYS FKRKETRPGD FQTVDVDFPN TTESYKLYSQ RVIASDIKEC VCRAPDTPFD ESAYSNIPMT PYELPDGQTI
301: EIGADRFKVP DVLFNPSLAQ TIPNMESFAD IAPSVRGLPQ MVIESINKCD VDIRRELFSS ILLAGGTASM QQLKERLEKD LLEESPQTAR VKVLASGNST
401: ERRFSVWIGG SILASLGSFQ QMWFSKAEYE EHGASYIQRK CP

Best Arabidopsis Sequence Match ( AT1G18450.1 )
(BLAST)

001: MYGGDEVSAI VVDLGSHTCK AGYAGEDAPK AVFPSVIGAV DGVEAMDVDV DSTKTNSNSE DSKTESEKEK SKRKLYVGSQ AMSYRRDHME VLSPIKDGIV
101: SDWDLVDNIW EHAFKSCLMI DPTEHPMLLA EPPLNTQQQR EKAAELMFEK YKVPALFMAK NPVLTSFATG RATSLVVDCG GGSTTISPVH DGYVLQKAVV
201: SSPLGGEFLT DCLLKSLESK GIKIRPRYSF KRKEVRAGEF QVEDVDIPDT TESYKLFCQR MIVGDIKDSI CRVPDTPYDD KSYSNIPTTS YELPDGQTLE
301: IGADRFKVPD VMFNPSIVQT IPGMEKYAEM IPSVRGLPHM VMESINKCDV DIRRELYSSI LLAGGTSSMQ QLKERLEKDL IEESPHSARV KVLASGNTTE
401: RRFSVWIGGS ILASLGSFQQ MWFSKSEYEE HGASYIQRKC P

Arabidopsis Description

ARP4Actin-related protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84M92]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.