Factsheet for Zm00001d027326_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
nucleus: 24677780

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93001	Sorghum	cytosol	97.74	97.74
Os08t0137200-01	Rice	nucleus	91.87	91.87
TraesCS5B01G358500.1	Wheat	cytosol	90.29	90.29
TraesCS5D01G364800.1	Wheat	cytosol	90.07	90.07
TraesCS5A01G356000.1	Wheat	cytosol, nucleus	89.84	89.84
TraesCS6B01G189000.1	Wheat	cytosol	89.62	89.62
TraesCS6D01G149800.1	Wheat	cytosol	89.16	89.16
TraesCS6A01G162300.2	Wheat	cytosol	88.49	88.49
HORVU6Hr1G032610.8	Barley	cytosol	89.16	82.12
HORVU5Hr1G088030.1	Barley	plastid	90.52	78.94
PGSC0003DMT400056033	Potato	cytosol	73.36	74.71
Solyc12g037980.1.1	Tomato	nucleus	72.69	74.02
KRH66446	Soybean	nucleus	73.36	73.03
GSMUA_Achr8P16860_001	Banana	endoplasmic reticulum	77.43	72.52
KRH48882	Soybean	nucleus	72.69	72.2
KRH41617	Soybean	nucleus	69.53	71.46
CDX83847	Canola	cytosol	68.17	68.79
CDY26159	Canola	cytosol	68.62	68.78
AT1G18450.1	Thale cress	cytosol	68.4	68.71
CDY19213	Canola	cytosol	68.4	68.55
CDX96721	Canola	cytosol	67.72	68.49
VIT_17s0000g04010.t01	Wine grape	mitochondrion	57.34	57.47
Zm00001d008746_P001	Maize	cytosol	26.41	42.55
Zm00001d053177_P004	Maize	cytosol	35.67	41.91
Zm00001d032480_P002	Maize	plasma membrane, plastid	35.67	41.91
Zm00001d013873_P001	Maize	plasma membrane, plastid	35.67	41.91
Zm00001d011086_P005	Maize	cytosol	35.44	41.64
Zm00001d035720_P002	Maize	cytosol	35.44	41.64
Zm00001d012277_P001	Maize	cytosol	35.21	41.49
Zm00001d042731_P002	Maize	extracellular, plasma membrane, plastid	34.99	41.22
Zm00001d013410_P001	Maize	cytosol	34.99	41.11
Zm00001d033790_P001	Maize	cytosol	34.99	41.11
Zm00001d035722_P007	Maize	plasma membrane	35.44	40.78
Zm00001d010159_P002	Maize	extracellular, plasma membrane	34.54	40.69
Zm00001d034761_P002	Maize	cytosol	35.67	40.31
Zm00001d016605_P001	Maize	cytosol	13.09	36.71
Zm00001d019396_P001	Maize	cytosol	13.77	36.31
Zm00001d016508_P001	Maize	cytosol	11.29	36.23
Zm00001d019635_P001	Maize	cytosol	10.84	34.78
Zm00001d011087_P001	Maize	plastid	35.44	34.58
Zm00001d007792_P001	Maize	cytosol	19.86	33.33
Zm00001d022558_P001	Maize	cytosol	27.09	30.85
Zm00001d003298_P001	Maize	cytosol	18.28	30.8
Zm00001d004087_P001	Maize	cytosol	13.32	27.31
Zm00001d049629_P002	Maize	nucleus	22.35	26.9
Zm00001d004855_P002	Maize	cytoskeleton, cytosol, nucleus	35.44	26.61
Zm00001d017106_P001	Maize	cytosol	25.73	26.33
Zm00001d050981_P001	Maize	cytosol	26.19	25.27
Zm00001d024059_P002	Maize	cytosol	24.15	24.88
Zm00001d014112_P003	Maize	cytosol	21.44	23.0
Zm00001d008652_P001	Maize	endoplasmic reticulum, plastid	9.93	19.05
Zm00001d034421_P004	Maize	plastid	16.7	15.81

Protein Annotations

MapMan:12.4.6.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	UniProt:B4FNB4	EMBL:BT038602
GO:GO:0000003	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0007275	GO:GO:0008150	GO:GO:0009628	GO:GO:0009791	GO:GO:0009987	GO:GO:0030154
GO:GO:0048235	GO:GO:0048574	ProteinID:ONL92796.1	PFAM:PF00022	PANTHER:PTHR11937	PANTHER:PTHR11937:SF274
SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI00017B6E04	EnsemblPlantsGene:Zm00001d027326	EnsemblPlants:Zm00001d027326_P001	EnsemblPlants:Zm00001d027326_T001
SEG:seg	:	:	:	:	:

Description

actin related protein like4Actin-related protein 4

Coordinates

chr1:-:2977014..2997162

Molecular Weight (calculated)

48824.9 Da

IEP (calculated)

4.859

GRAVY (calculated)

-0.311

Length

443 amino acids

Sequence
(BLAST)

001: MYGGDEVSAI VIDVGSYSCK AGYAGDDTPK AVFPSVVGSI EQTEDTDDPK PEKEADSASD SKNGAKPMDV DKAKTKRRLY VGQELEFRRD HMEVISSMKD
101: GTVTDWDIVD NIWNHAFRRR LLINPEEHPM LIAEPSTNTA QQREKAAELM FENYKVPALF LAKNAVLTSF ASGRATSLVV DSGGGSTVVS AVHDGFVLQK
201: SVSTSPVGGE FLTDCMMKSL ESKGIVIRPR YSFKKKEISP GEYKIVDLDL PNTTESYRLY CMRAIASDVK ESVCRVPDTA FDEVAYANVP TTSYELPDGQ
301: TIEVGADRFK VPDILFNPSL SQTIPGIDGF ADSIPVRGLQ RMVIDSVNKC DVDIRKELFS NILLSGGSSS ILQLKERLEK EVLEESPQAA RVKVMASGNS
401: VERRFSVWIG GSILASLGSF QQMWFSKAEY EEHGVSYIQR KCP

Best Arabidopsis Sequence Match ( AT1G18450.1 )
(BLAST)

001: MYGGDEVSAI VVDLGSHTCK AGYAGEDAPK AVFPSVIGAV DGVEAMDVDV DSTKTNSNSE DSKTESEKEK SKRKLYVGSQ AMSYRRDHME VLSPIKDGIV
101: SDWDLVDNIW EHAFKSCLMI DPTEHPMLLA EPPLNTQQQR EKAAELMFEK YKVPALFMAK NPVLTSFATG RATSLVVDCG GGSTTISPVH DGYVLQKAVV
201: SSPLGGEFLT DCLLKSLESK GIKIRPRYSF KRKEVRAGEF QVEDVDIPDT TESYKLFCQR MIVGDIKDSI CRVPDTPYDD KSYSNIPTTS YELPDGQTLE
301: IGADRFKVPD VMFNPSIVQT IPGMEKYAEM IPSVRGLPHM VMESINKCDV DIRRELYSSI LLAGGTSSMQ QLKERLEKDL IEESPHSARV KVLASGNTTE
401: RRFSVWIGGS ILASLGSFQQ MWFSKSEYEE HGASYIQRKC P

Arabidopsis Description

ARP4Actin-related protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84M92]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.