Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d019635_P001 | Maize | cytosol | 81.01 | 92.75 |
| Zm00001d016508_P001 | Maize | cytosol | 72.78 | 83.33 |
| PGSC0003DMT400076499 | Potato | cytosol | 88.61 | 72.54 |
| Zm00001d019396_P001 | Maize | cytosol | 74.68 | 70.24 |
| Zm00001d003298_P001 | Maize | cytosol | 86.08 | 51.71 |
| Zm00001d004087_P001 | Maize | cytosol | 60.13 | 43.98 |
| PGSC0003DMT400088088 | Potato | cytosol | 53.8 | 43.81 |
| CDX92271 | Canola | cytosol | 87.34 | 43.53 |
| CDX99315 | Canola | cytosol | 86.08 | 42.11 |
| Bra022356.1-P | Field mustard | cytosol | 85.44 | 41.8 |
| PGSC0003DMT400087294 | Potato | mitochondrion | 68.35 | 39.42 |
| Zm00001d007792_P001 | Maize | cytosol | 65.19 | 39.02 |
| PGSC0003DMT400010174 | Potato | cytosol | 93.04 | 38.99 |
| Zm00001d053177_P004 | Maize | cytosol | 93.04 | 38.99 |
| PGSC0003DMT400047481 | Potato | cytosol | 93.04 | 38.99 |
| Solyc03g078400.2.1 | Tomato | nucleus, plastid | 93.04 | 38.99 |
| Solyc11g005330.1.1 | Tomato | nucleus | 93.04 | 38.99 |
| Zm00001d011086_P005 | Maize | cytosol | 93.04 | 38.99 |
| Zm00001d035720_P002 | Maize | cytosol | 93.04 | 38.99 |
| CDX69885 | Canola | cytosol | 93.04 | 38.99 |
| Bra028615.1-P | Field mustard | cytosol | 93.04 | 38.99 |
| CDY21607 | Canola | cytosol | 93.04 | 38.99 |
| AT5G09810.1 | Thale cress | cytosol | 93.04 | 38.99 |
| VIT_12s0178g00200.t01 | Wine grape | cytosol | 92.41 | 38.73 |
| CDX81140 | Canola | cytosol | 92.41 | 38.73 |
| KRH64098 | Soybean | cytosol | 92.41 | 38.73 |
| KRH59535 | Soybean | cytosol | 92.41 | 38.73 |
| CDY56544 | Canola | cytosol | 92.41 | 38.73 |
| KRH43389 | Soybean | cytosol | 92.41 | 38.73 |
| Zm00001d033790_P001 | Maize | cytosol | 91.77 | 38.46 |
| Zm00001d032480_P002 | Maize | plasma membrane, plastid | 91.77 | 38.46 |
| Bra006033.1-P | Field mustard | cytosol | 91.77 | 38.46 |
| Zm00001d013873_P001 | Maize | plasma membrane, plastid | 91.77 | 38.46 |
| Zm00001d013410_P001 | Maize | cytosol | 91.77 | 38.46 |
| Bra037560.1-P | Field mustard | cytoskeleton, cytosol | 85.44 | 38.24 |
| KRH43946 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 91.14 | 38.2 |
| Solyc01g104770.2.1 | Tomato | nucleus | 91.14 | 38.2 |
| KRH10484 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 91.14 | 38.2 |
| Zm00001d035722_P007 | Maize | plasma membrane | 93.04 | 38.18 |
| Zm00001d012277_P001 | Maize | cytosol | 89.87 | 37.77 |
| Zm00001d042731_P002 | Maize | extracellular, plasma membrane, plastid | 88.61 | 37.23 |
| Zm00001d034761_P002 | Maize | cytosol | 91.77 | 36.99 |
| Zm00001d010159_P002 | Maize | extracellular, plasma membrane | 87.97 | 36.97 |
| AT3G18780.3 | Thale cress | cytosol | 87.34 | 36.6 |
| AT1G49240.1 | Thale cress | cytosol | 87.34 | 36.6 |
| CDX82326 | Canola | cytosol | 87.34 | 36.6 |
| Solyc04g071260.2.1 | Tomato | plastid | 87.34 | 36.6 |
| CDY61982 | Canola | cytosol | 87.34 | 36.6 |
| CDY18545 | Canola | cytosol | 87.34 | 36.6 |
| CDX92272 | Canola | cytosol | 87.34 | 36.6 |
| CDX95498 | Canola | cytosol | 87.34 | 36.6 |
| CDY31972 | Canola | cytosol | 77.85 | 34.84 |
| CDY40061 | Canola | cytosol | 77.85 | 34.84 |
| CDY30296 | Canola | cytosol | 77.85 | 34.84 |
| CDX85794 | Canola | cytosol | 77.85 | 34.84 |
| Bra009081.1-P | Field mustard | cytosol | 77.22 | 34.56 |
| GSMUA_Achr2P08030_001 | Banana | cytosol | 74.68 | 33.71 |
| Zm00001d011087_P001 | Maize | plastid | 93.04 | 32.38 |
| PGSC0003DMT400022210 | Potato | cytosol | 75.32 | 32.34 |
| PGSC0003DMT400022205 | Potato | cytosol | 74.68 | 32.24 |
| VIT_04s0044g00580.t01 | Wine grape | extracellular | 92.41 | 31.74 |
| PGSC0003DMT400074882 | Potato | cytosol | 74.05 | 31.62 |
| KRH53856 | Soybean | endoplasmic reticulum, mitochondrion | 65.82 | 31.33 |
| PGSC0003DMT400074887 | Potato | cytosol | 68.35 | 29.19 |
| Zm00001d034421_P004 | Maize | plastid | 84.18 | 28.42 |
| Zm00001d004855_P002 | Maize | cytoskeleton, cytosol, nucleus | 92.41 | 24.75 |
| Zm00001d008652_P001 | Maize | endoplasmic reticulum, plastid | 32.91 | 22.51 |
| Zm00001d022558_P001 | Maize | cytosol | 46.2 | 18.77 |
| Zm00001d017106_P001 | Maize | cytosol | 41.14 | 15.01 |
| Zm00001d050981_P001 | Maize | cytosol | 39.87 | 13.73 |
| Zm00001d027326_P001 | Maize | cytosol, extracellular, nucleus | 36.71 | 13.09 |
| Zm00001d008746_P001 | Maize | cytosol | 22.78 | 13.09 |
| Zm00001d014112_P003 | Maize | cytosol | 29.75 | 11.38 |
| Zm00001d049629_P002 | Maize | nucleus | 24.68 | 10.6 |
| Zm00001d024059_P002 | Maize | cytosol | 28.48 | 10.47 |
| PGSC0003DMT400076501 | Potato | cytosol | 3.16 | 2.5 |
Protein Annotations
| EnsemblPlants:Zm00001d016605_P001 | EnsemblPlants:Zm00001d016605_T001 | EnsemblPlantsGene:Zm00001d016605 | Gene3D:2.30.36.70 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:Actin | InterPro:Actin_CS | PANTHER:PTHR11937 | PANTHER:PTHR11937:SF355 | PFAM:PF00022 |
| PRINTS:PR00190 | ProteinID:AQK71256.1 | ScanProsite:PS00406 | SMART:SM00268 | SUPFAM:SSF53067 | TMHMM:TMhelix |
| UniParc:UPI00084357C9 | UniProt:A0A1Q1A3L9 | UniProt:A0A1X8EQJ1 | MapMan:35.1 | : | : |
Description
Actin-7
Coordinates
chr5:+:169762538..169763120
Molecular Weight (calculated)
17716.4 Da
IEP (calculated)
6.679
GRAVY (calculated)
-0.165
Length
158 amino acids
Sequence
(BLAST)
(BLAST)
001: MANGEDIQPL VCDNGTRMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAL
101: EEHPVLLTKA PLNPKANREK MTQIMFETFN VPAMYVAIQA VLSLYAILNG TYLYYINS
101: EEHPVLLTKA PLNPKANREK MTQIMFETFN VPAMYVAIQA VLSLYAILNG TYLYYINS
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDY LMKILTERGY
201: SFTTSAEREI VRDVKEKLAY IALDYEQEME TANTSSSVEK SYELPDGQVI TIGGERFRCP EVLFQPSLVG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDY LMKILTERGY
201: SFTTSAEREI VRDVKEKLAY IALDYEQEME TANTSSSVEK SYELPDGQVI TIGGERFRCP EVLFQPSLVG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
Arabidopsis Description
ACT11Actin-11 [Source:UniProtKB/Swiss-Prot;Acc:P53496]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.