Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
plastid: 22065420 plastid: 23198870 plasma membrane: 23353019 plasma membrane: 23508561 nucleus: 24677780 mitochondrion: 27297264 plasma membrane: 27341663 |
msms PMID:
24677780
doi
State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.
msms PMID:
23353019
doi
University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
23198870
doi
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
msms PMID:
20408568
doi
Department of Plant Nutrition, China Agricultural University, Beijing, PR China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG21029 | Sorghum | cytosol | 97.92 | 100.0 |
| Zm00001d011086_P005 | Maize | cytosol | 97.92 | 100.0 |
| Zm00001d035720_P002 | Maize | cytosol | 97.92 | 100.0 |
| Os05t0106600-01 | Rice | nucleus | 96.88 | 98.94 |
| TraesCS1B01G024500.1 | Wheat | golgi, nucleus | 96.36 | 98.41 |
| TraesCS1D01G020000.1 | Wheat | cytosol | 96.36 | 98.41 |
| KRH64098 | Soybean | cytosol | 95.58 | 97.61 |
| KRH59535 | Soybean | cytosol | 95.58 | 97.61 |
| KRH43389 | Soybean | cytosol | 95.58 | 97.61 |
| KRH53856 | Soybean | endoplasmic reticulum, mitochondrion | 84.16 | 97.59 |
| AT5G09810.1 | Thale cress | cytosol | 95.32 | 97.35 |
| Zm00001d013873_P001 | Maize | plasma membrane, plastid | 95.32 | 97.35 |
| Zm00001d053177_P004 | Maize | cytosol | 95.32 | 97.35 |
| VIT_12s0178g00200.t01 | Wine grape | cytosol | 95.32 | 97.35 |
| PGSC0003DMT400047481 | Potato | cytosol | 95.06 | 97.08 |
| CDY21607 | Canola | cytosol | 95.06 | 97.08 |
| Zm00001d032480_P002 | Maize | plasma membrane, plastid | 95.06 | 97.08 |
| Solyc03g078400.2.1 | Tomato | nucleus, plastid | 95.06 | 97.08 |
| CDX69885 | Canola | cytosol | 95.06 | 97.08 |
| CDY30296 | Canola | cytosol | 88.83 | 96.88 |
| CDY31972 | Canola | cytosol | 88.83 | 96.88 |
| CDY40061 | Canola | cytosol | 88.83 | 96.88 |
| CDX85794 | Canola | cytosol | 88.83 | 96.88 |
| Bra028615.1-P | Field mustard | cytosol | 94.81 | 96.82 |
| Bra009081.1-P | Field mustard | cytosol | 88.57 | 96.6 |
| CDY56544 | Canola | cytosol | 94.55 | 96.55 |
| PGSC0003DMT400010174 | Potato | cytosol | 94.55 | 96.55 |
| CDX81140 | Canola | cytosol | 94.55 | 96.55 |
| Solyc11g005330.1.1 | Tomato | nucleus | 94.55 | 96.55 |
| Zm00001d033790_P001 | Maize | cytosol | 94.29 | 96.29 |
| Zm00001d013410_P001 | Maize | cytosol | 94.29 | 96.29 |
| Bra006033.1-P | Field mustard | cytosol | 94.29 | 96.29 |
| PGSC0003DMT400076499 | Potato | cytosol | 48.05 | 95.85 |
| Solyc01g104770.2.1 | Tomato | nucleus | 93.77 | 95.76 |
| Zm00001d019635_P001 | Maize | cytosol | 34.29 | 95.65 |
| Zm00001d012277_P001 | Maize | cytosol | 92.47 | 94.68 |
| KRH10484 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 92.47 | 94.43 |
| KRH43946 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 92.47 | 94.43 |
| Zm00001d042731_P002 | Maize | extracellular, plasma membrane, plastid | 91.17 | 93.35 |
| Zm00001d016605_P001 | Maize | cytosol | 38.18 | 93.04 |
| Zm00001d034761_P002 | Maize | cytosol | 94.29 | 92.6 |
| Solyc04g071260.2.1 | Tomato | plastid | 90.39 | 92.31 |
| Zm00001d010159_P002 | Maize | extracellular, plasma membrane | 90.13 | 92.29 |
| CDX99315 | Canola | cytosol | 76.62 | 91.33 |
| HORVU1Hr1G002840.6 | Barley | plasma membrane | 96.36 | 91.15 |
| TraesCS1A01G020500.2 | Wheat | cytosol | 96.36 | 91.15 |
| Bra022356.1-P | Field mustard | cytosol | 76.36 | 91.02 |
| AT1G49240.1 | Thale cress | cytosol | 89.09 | 90.98 |
| AT3G18780.3 | Thale cress | cytosol | 88.83 | 90.72 |
| CDX82326 | Canola | cytosol | 88.83 | 90.72 |
| CDX92272 | Canola | cytosol | 88.83 | 90.72 |
| CDX95498 | Canola | cytosol | 88.83 | 90.72 |
| CDY18545 | Canola | cytosol | 88.83 | 90.72 |
| CDY61982 | Canola | cytosol | 88.83 | 90.72 |
| CDX92271 | Canola | cytosol | 74.29 | 90.22 |
| KXG21030 | Sorghum | cytosol | 88.05 | 87.15 |
| PGSC0003DMT400076501 | Potato | cytosol | 45.19 | 87.0 |
| Zm00001d016508_P001 | Maize | cytosol | 30.91 | 86.23 |
| Zm00001d008746_P001 | Maize | cytosol | 60.78 | 85.09 |
| Zm00001d011087_P001 | Maize | plastid | 99.22 | 84.14 |
| Bra037560.1-P | Field mustard | cytoskeleton, cytosol | 75.84 | 82.72 |
| Zm00001d019396_P001 | Maize | cytosol | 35.84 | 82.14 |
| Zm00001d007792_P001 | Maize | cytosol | 54.81 | 79.92 |
| VIT_04s0044g00580.t01 | Wine grape | extracellular | 95.06 | 79.57 |
| PGSC0003DMT400087294 | Potato | mitochondrion | 55.32 | 77.74 |
| Zm00001d003298_P001 | Maize | cytosol | 52.21 | 76.43 |
| Zm00001d004087_P001 | Maize | cytosol | 40.52 | 72.22 |
| PGSC0003DMT400022210 | Potato | cytosol | 67.01 | 70.11 |
| PGSC0003DMT400022205 | Potato | cytosol | 65.71 | 69.13 |
| PGSC0003DMT400074882 | Potato | cytosol | 65.97 | 68.65 |
| PGSC0003DMT400074887 | Potato | cytosol | 63.12 | 65.68 |
| PGSC0003DMT400088088 | Potato | cytosol | 32.21 | 63.92 |
| Zm00001d004855_P002 | Maize | cytoskeleton, cytosol, nucleus | 94.55 | 61.69 |
| Zm00001d022558_P001 | Maize | cytosol | 45.71 | 45.24 |
| Zm00001d034421_P004 | Maize | plastid | 45.45 | 37.39 |
| Zm00001d027326_P001 | Maize | cytosol, extracellular, nucleus | 40.78 | 35.44 |
| Zm00001d017106_P001 | Maize | cytosol | 38.18 | 33.95 |
| Zm00001d049629_P002 | Maize | nucleus | 31.43 | 32.88 |
| Zm00001d050981_P001 | Maize | cytosol | 37.92 | 31.81 |
| Zm00001d014112_P003 | Maize | cytosol | 32.99 | 30.75 |
| Zm00001d024059_P002 | Maize | cytosol | 32.99 | 29.53 |
| Zm00001d008652_P001 | Maize | endoplasmic reticulum, plastid | 16.62 | 27.71 |
Protein Annotations
| EntrezGene:100191561 | EntrezGene:103629275 | EntrezGene:103629276 | EntrezGene:103635981 | MapMan:20.2.1 | Gene3D:3.30.420.40 |
| Gene3D:3.90.640.10 | UniProt:A0A1D6LI44 | ProteinID:AQK79525.1 | InterPro:Actin | InterPro:Actin/actin-like_CS | InterPro:Actin_CS |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | PFAM:PF00022 | PRINTS:PR00190 |
| ScanProsite:PS00406 | ScanProsite:PS00432 | ScanProsite:PS01132 | PANTHER:PTHR11937 | PANTHER:PTHR11937:SF355 | SMART:SM00268 |
| SUPFAM:SSF53067 | UniParc:UPI00084292D7 | EnsemblPlantsGene:Zm00001d035722 | EnsemblPlants:Zm00001d035722_P007 | EnsemblPlants:Zm00001d035722_T007 | : |
Description
Actin-7
Coordinates
chr6:-:43060092..43062848
Molecular Weight (calculated)
42489.0 Da
IEP (calculated)
4.976
GRAVY (calculated)
-0.170
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAASSLEMA DGEDIQPLVC DNGTGMVKAG FAGDDAPRAV FPSIVGRPRH TGVMVGMGQK DAYVGDEAQS KRGILTLKYP IEHGIVSNWD DMEKIWHHTF
101: YNELRVAPEE HPVLLTEAPL NPKANREKMT QIMFETFNVP AMYVAIQAVL SLYASGRTTG IVLDSGDGVS HTVPIYEGYA LPHAILRLDL AGRDLTDSLM
201: KILTERGYSF TTSAEREIVR DIKEKLAYIA LDYEQELETA KNSSSVEKSY ELPDGQVITI GAERFRCPEV LFQPSMIGME AAGIHETTYN SIMKCDVDIR
301: KDLYGNIVLS GGSTMFPGIA DRMSKEITSL APSSMKIKVV APPERKYSVW IGGSILASLS TFQQMWISKE EYDESGPAIV HRKCF
101: YNELRVAPEE HPVLLTEAPL NPKANREKMT QIMFETFNVP AMYVAIQAVL SLYASGRTTG IVLDSGDGVS HTVPIYEGYA LPHAILRLDL AGRDLTDSLM
201: KILTERGYSF TTSAEREIVR DIKEKLAYIA LDYEQELETA KNSSSVEKSY ELPDGQVITI GAERFRCPEV LFQPSMIGME AAGIHETTYN SIMKCDVDIR
301: KDLYGNIVLS GGSTMFPGIA DRMSKEITSL APSSMKIKVV APPERKYSVW IGGSILASLS TFQQMWISKE EYDESGPAIV HRKCF
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
Arabidopsis Description
ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.