Factsheet for Solyc11g005330.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 5
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g078400.2.1
Solyc03g119090.2.1
Solyc08g062650.2.1
Solyc09g010750.1.1
Solyc09g072600.1.1
Solyc10g086460.1.1
Solyc11g005330.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G49240.1	Solyc08g062650.2.1	AT1G72770.1	19033529
AT5G09810.1	Solyc09g072600.1.1	AT2G31200.1	21798944
AT5G09810.1	Solyc09g010750.1.1	AT2G37620.1	21798944
AT5G09810.1	Solyc10g086460.1.1	AT2G37620.1	21798944
AT5G09810.1	Solyc09g010750.1.1	AT3G12110.1	21798944
AT5G09810.1	Solyc10g086460.1.1	AT3G12110.1	21798944
AT5G09810.1	Solyc03g119090.2.1	AT3G18060.1	21798944
AT5G09810.1	Solyc03g078400.2.1	AT5G09810.1	21798944
AT5G09810.1	Solyc11g005330.1.1	AT5G09810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010174	Potato	cytosol	100.0	100.0
Solyc03g078400.2.1	Tomato	nucleus, plastid	99.47	99.47
KRH53856	Soybean	endoplasmic reticulum, mitochondrion	86.74	98.49
KRH64098	Soybean	cytosol	98.41	98.41
KRH43389	Soybean	cytosol	98.14	98.14
KRH59535	Soybean	cytosol	98.14	98.14
AT5G09810.1	Thale cress	cytosol	97.88	97.88
CDX69885	Canola	cytosol	97.88	97.88
CDY21607	Canola	cytosol	97.88	97.88
CDX85794	Canola	cytosol	91.51	97.73
CDY30296	Canola	cytosol	91.51	97.73
CDY31972	Canola	cytosol	91.51	97.73
CDY40061	Canola	cytosol	91.51	97.73
Bra028615.1-P	Field mustard	cytosol	97.61	97.61
Bra009081.1-P	Field mustard	cytosol	91.25	97.45
CDX81140	Canola	cytosol	97.35	97.35
CDY56544	Canola	cytosol	97.35	97.35
TraesCS5B01G124100.1	Wheat	cytosol	97.35	97.35
Bra006033.1-P	Field mustard	cytosol	97.08	97.08
HORVU5Hr1G117900.1	Barley	cytosol	97.08	97.08
Os11t0163100-01	Rice	nucleus, plasma membrane, plastid	97.08	97.08
TraesCS5B01G516100.1	Wheat	cytosol	97.08	97.08
TraesCS5D01G516200.1	Wheat	cytosol	97.08	97.08
GSMUA_Achr9P08850_001	Banana	cytosol	89.66	96.85
GSMUA_Achr3P02960_001	Banana	cytosol	96.82	96.82
GSMUA_Achr6P25350_001	Banana	cytosol	96.82	96.82
GSMUA_Achr8P16150_001	Banana	cytosol	96.82	96.82
KXG23031	Sorghum	cytosol	96.82	96.82
Os05t0106600-01	Rice	nucleus	96.82	96.82
TraesCS4A01G356100.2	Wheat	cytosol	97.08	96.57
EES08028	Sorghum	cytosol	96.55	96.55
GSMUA_Achr5P29190_001	Banana	cytosol	89.12	96.55
KXG21029	Sorghum	cytosol	96.55	96.55
Zm00001d011086_P005	Maize	cytosol	96.55	96.55
Zm00001d035720_P002	Maize	cytosol	96.55	96.55
GSMUA_Achr9P03170_001	Banana	cytosol	96.29	96.54
Os01t0964133-01	Rice	plasma membrane	96.29	96.29
Solyc01g104770.2.1	Tomato	nucleus	96.29	96.29
Solyc10g080500.1.1	Tomato	extracellular, nucleus, plastid, unclear	96.29	96.29
TraesCS1B01G024500.1	Wheat	golgi, nucleus	96.29	96.29
TraesCS1D01G020000.1	Wheat	cytosol	96.29	96.29
Zm00001d053177_P004	Maize	cytosol	96.29	96.29
GSMUA_Achr11P...	Banana	cytosol	89.12	96.28
GSMUA_Achr2P16160_001	Banana	cytosol	96.02	96.02
Os03t0836000-01	Rice	plasma membrane, plastid	96.02	96.02
Solyc04g011500.2.1	Tomato	extracellular, nucleus, plastid, unclear	96.02	96.02
GSMUA_Achr10P...	Banana	cytosol	95.76	95.76
Zm00001d019635_P001	Maize	cytosol	35.01	95.65
EER90564	Sorghum	cytosol	95.49	95.49
GSMUA_Achr7P10410_001	Banana	cytosol	95.49	95.49
GSMUA_Achr8P02660_001	Banana	cytosol	95.49	95.49
Solyc11g065990.1.1	Tomato	nucleus, plastid, unclear	95.23	95.23
GSMUA_Achr6P34320_001	Banana	cytosol	61.54	95.08
Solyc05g054480.2.1	Tomato	extracellular, nucleus, plastid, unclear	94.96	94.96
Solyc06g076090.2.1	Tomato	unclear	94.96	94.96
Zm00001d035722_P007	Maize	plasma membrane	96.55	94.55
Zm00001d012277_P001	Maize	cytosol	94.16	94.41
GSMUA_Achr11P...	Banana	cytosol	94.16	94.16
Solyc10g086460.1.1	Tomato	unclear	93.63	93.63
EES01810	Sorghum	cytosol	93.37	93.62
TraesCS5D01G132200.1	Wheat	golgi	92.04	93.53
Zm00001d042731_P002	Maize	extracellular, plasma membrane, plastid	92.84	93.09
Zm00001d016605_P001	Maize	cytosol	38.99	93.04
HORVU1Hr1G074350.1	Barley	cytosol	92.57	92.82
TraesCS1A01G274400.1	Wheat	golgi	92.57	92.82
TraesCS1B01G283900.1	Wheat	cytosol	92.57	92.82
TraesCS1D01G274400.1	Wheat	cytosol	92.57	92.82
Os05t0438800-01	Rice	plasma membrane, plastid	92.31	92.55
AT1G49240.1	Thale cress	cytosol	92.04	92.04
CDX82326	Canola	cytosol	92.04	92.04
Bra022356.1-P	Field mustard	cytosol	78.78	91.95
CDX99315	Canola	cytosol	78.78	91.95
Zm00001d034761_P002	Maize	cytosol	95.49	91.84
AT3G18780.3	Thale cress	cytosol	91.78	91.78
CDX92272	Canola	cytosol	91.78	91.78
CDX95498	Canola	cytosol	91.78	91.78
CDY18545	Canola	cytosol	91.78	91.78
CDY61982	Canola	cytosol	91.78	91.78
EES19603	Sorghum	cytosol	91.51	91.76
Zm00001d010159_P002	Maize	extracellular, plasma membrane	91.25	91.49
CDX92271	Canola	cytosol	76.66	91.17
Solyc04g071260.2.1	Tomato	plastid	90.98	90.98
TraesCS5A01G124300.2	Wheat	golgi	97.35	89.73
HORVU1Hr1G002840.6	Barley	plasma membrane	96.29	89.19
TraesCS1A01G020500.2	Wheat	cytosol	96.29	89.19
Zm00001d016508_P001	Maize	cytosol	31.57	86.23
GSMUA_Achr10P...	Banana	cytosol	62.86	86.18
Solyc09g010750.1.1	Tomato	cytosol	40.58	85.47
Zm00001d008746_P001	Maize	cytosol	61.8	84.73
KXG21030	Sorghum	cytosol	87.27	84.58
Bra037560.1-P	Field mustard	cytoskeleton, cytosol	78.51	83.85
GSMUA_Achr2P08030_001	Banana	cytosol	77.19	83.14
Zm00001d019396_P001	Maize	cytosol	36.6	82.14
VIT_04s0044g00580.t01	Wine grape	extracellular	98.41	80.65
Zm00001d011087_P001	Maize	plastid	96.55	80.18
Zm00001d007792_P001	Maize	cytosol	55.44	79.17
Zm00001d003298_P001	Maize	cytosol	52.79	75.67
HORVU5Hr1G039850.3	Barley	mitochondrion	93.1	75.48
Zm00001d004087_P001	Maize	cytosol	41.38	72.22
Os01t0866100-01	Rice	plasma membrane	37.93	70.44
Zm00001d004855_P002	Maize	cytoskeleton, cytosol, nucleus	95.23	60.85
Solyc02g094320.2.1	Tomato	cytosol	44.83	43.44
Solyc11g008500.1.1	Tomato	cytosol, nucleus	37.67	39.44
Solyc12g037980.1.1	Tomato	nucleus	43.24	37.47
Zm00001d034421_P004	Maize	plastid	45.89	36.97
Solyc05g013940.2.1	Tomato	cytosol	39.26	34.5
Solyc04g024530.2.1	Tomato	cytosol	38.99	34.27
Solyc05g018600.2.1	Tomato	cytosol	32.36	27.85

Protein Annotations

MapMan:20.2.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	InterPro:Actin/actin-like_CS	InterPro:Actin_CS
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	UniProt:K4D4E6	PFAM:PF00022	PRINTS:PR00190
ScanProsite:PS00406	ScanProsite:PS00432	ScanProsite:PS01132	PANTHER:PTHR11937	PANTHER:PTHR11937:SF358	SMART:SM00268
SUPFAM:SSF53067	EnsemblPlantsGene:Solyc11g005330.1	EnsemblPlants:Solyc11g005330.1.1	UniParc:UPI00027697AB	:	:

Description

No Description!

Coordinates

chr11:-:263971..265417

Molecular Weight (calculated)

41787.3 Da

IEP (calculated)

5.162

GRAVY (calculated)

-0.187

Length

377 amino acids

Sequence
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDN LMKILTERGY
201: MFTTTAEREI VRDMKEKLAY VALDYEQEIE TARSSSSIEK NYELPDGQVI TIGAERFRCP EVLFQPSMIG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGSTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KGEYDESGPS IVHRKCF

Best Arabidopsis Sequence Match ( AT5G09810.1 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDS LMKILTERGY
201: MFTTTAEREI VRDIKEKLAY VALDYEQELE TAKSSSSVEK NYELPDGQVI TIGAERFRCP EVLFQPSLIG MEAPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGSTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KSEYDESGPS IVHRKCF

Arabidopsis Description

ACT7AtACT7 [Source:UniProtKB/TrEMBL;Acc:A0A178UEW4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.