Skip to main content
crop-pal logo
Sorghum
Search for another protein from :
Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • mitochondrion 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytoskeleton, cytosol, mitochondrion
BaCelLo:cytosol
EpiLoc:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
EER90564
EER90794
EES00964
EES01810
EES08028
EES19603
KXG21029
KXG21030
KXG22422
KXG22681
KXG23031
KXG32003
KXG39048
OQU87413

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G49240.1 EES00964 AT1G72770.1 19033529
AT1G49240.1 KXG22422 AT1G72770.1 19033529
AT1G49240.1 KXG22681 AT1G72770.1 19033529
AT1G49240.1 OQU87413 AT1G72770.1 19033529
AT5G09810.1 EER90794 AT2G31200.1 21798944
AT5G09810.1 KXG39048 AT2G31200.1 21798944
AT5G09810.1 KXG32003 AT3G18060.1 21798944
AT5G09810.1 EER90564 AT5G09810.1 21798944
AT5G09810.1 EES01810 AT5G09810.1 21798944
AT5G09810.1 EES08028 AT5G09810.1 21798944
AT5G09810.1 EES19603 AT5G09810.1 21798944
AT5G09810.1 KXG21029 AT5G09810.1 21798944
AT5G09810.1 KXG21030 AT5G09810.1 21798944
AT5G09810.1 KXG23031 AT5G09810.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d012277_P001 Maize cytosol 98.94 98.94
Zm00001d042731_P002 Maize extracellular, plasma membrane, plastid 98.67 98.67
KXG23031 Sorghum cytosol 95.48 95.23
GSMUA_Achr5P29190_001 Banana cytosol 87.5 94.54
EES08028 Sorghum cytosol 94.68 94.43
GSMUA_Achr10P... Banana cytosol 94.68 94.43
GSMUA_Achr9P03170_001 Banana cytosol 94.41 94.41
GSMUA_Achr8P02660_001 Banana cytosol 94.41 94.16
EER93954 Sorghum cytosol 94.41 94.16
GSMUA_Achr2P16160_001 Banana cytosol 94.41 94.16
GSMUA_Achr8P16150_001 Banana cytosol 94.41 94.16
KXG37705 Sorghum cytosol 94.15 93.9
VIT_12s0178g00200.t01 Wine grape cytosol 94.15 93.9
AT5G09810.1 Thale cress cytosol 94.15 93.9
GSMUA_Achr6P34320_001 Banana cytosol 60.9 93.85
GSMUA_Achr7P10410_001 Banana cytosol 93.88 93.63
GSMUA_Achr3P02960_001 Banana cytosol 93.88 93.63
CDY56544 Canola cytosol 93.88 93.63
CDX81140 Canola cytosol 93.88 93.63
CDY21607 Canola cytosol 93.88 93.63
CDX69885 Canola cytosol 93.88 93.63
GSMUA_Achr9P08850_001 Banana cytosol 86.7 93.41
Bra006033.1-P Field mustard cytosol 93.62 93.37
GSMUA_Achr6P25350_001 Banana cytosol 93.62 93.37
KRH43389 Soybean cytosol 93.62 93.37
KRH59535 Soybean cytosol 93.62 93.37
KXG21029 Sorghum cytosol 93.62 93.37
Bra028615.1-P Field mustard cytosol 93.62 93.37
PGSC0003DMT400010174 Potato cytosol 93.62 93.37
PGSC0003DMT400047481 Potato cytosol 93.62 93.37
EER90564 Sorghum cytosol 93.62 93.37
Solyc03g078400.2.1 Tomato nucleus, plastid 93.62 93.37
Solyc11g005330.1.1 Tomato nucleus 93.62 93.37
EES19603 Sorghum cytosol 93.35 93.35
CDY31972 Canola cytosol 87.5 93.2
CDX85794 Canola cytosol 87.5 93.2
CDY30296 Canola cytosol 87.5 93.2
CDY40061 Canola cytosol 87.5 93.2
GSMUA_Achr11P... Banana cytosol 86.44 93.12
KRH64098 Soybean cytosol 93.35 93.1
KRH53856 Soybean endoplasmic reticulum, mitochondrion 82.18 93.07
Bra009081.1-P Field mustard cytosol 87.23 92.92
GSMUA_Achr11P... Banana cytosol 93.09 92.84
PGSC0003DMT400076499 Potato cytosol 47.61 92.75
Solyc01g104770.2.1 Tomato nucleus 92.82 92.57
KRH10484 Soybean endoplasmic reticulum, mitochondrion, nucleus 90.96 90.72
KRH43946 Soybean endoplasmic reticulum, mitochondrion, nucleus 90.96 90.72
Solyc04g071260.2.1 Tomato plastid 90.43 90.19
Zm00001d016508_P001 Maize cytosol 32.98 89.86
Zm00001d008746_P001 Maize cytosol 65.69 89.82
CDX99315 Canola cytosol 77.13 89.78
AT3G18780.3 Thale cress cytosol 89.89 89.66
CDY61982 Canola cytosol 89.89 89.66
CDX92272 Canola cytosol 89.89 89.66
CDX95498 Canola cytosol 89.89 89.66
CDY18545 Canola cytosol 89.89 89.66
CDX82326 Canola cytosol 89.63 89.39
AT1G49240.1 Thale cress cytosol 89.63 89.39
Bra022356.1-P Field mustard cytosol 76.33 88.85
CDX92271 Canola cytosol 74.47 88.33
GSMUA_Achr10P... Banana cytosol 61.97 84.73
Zm00001d019396_P001 Maize cytosol 37.77 84.52
PGSC0003DMT400076501 Potato cytosol 44.41 83.5
Zm00001d007792_P001 Maize cytosol 57.98 82.58
Bra037560.1-P Field mustard cytoskeleton, cytosol 76.86 81.87
KXG21030 Sorghum cytosol 84.31 81.49
PGSC0003DMT400087294 Potato mitochondrion 55.85 76.64
VIT_04s0044g00580.t01 Wine grape extracellular 93.62 76.52
PGSC0003DMT400022210 Potato cytosol 67.29 68.75
PGSC0003DMT400022205 Potato cytosol 64.89 66.67
PGSC0003DMT400074882 Potato cytosol 64.89 65.95
PGSC0003DMT400074887 Potato cytosol 61.7 62.7
PGSC0003DMT400088088 Potato cytosol 32.18 62.37
EER99952 Sorghum cytosol 45.48 43.96
EER93001 Sorghum cytosol 42.29 35.89
EER91551 Sorghum cytosol 33.78 35.28
KXG30555 Sorghum cytosol 38.03 33.03
KXG24330 Sorghum cytosol 37.5 32.41
OQU79631 Sorghum cytosol 33.78 29.4
Protein Annotations
MapMan:20.2.1Gene3D:3.30.420.40Gene3D:3.90.640.10EntrezGene:8062375InterPro:ActinInterPro:Actin/actin-like_CS
InterPro:Actin_CSUniProt:C5XQM4EnsemblPlants:EES01810ProteinID:EES01810ProteinID:EES01810.1GO:GO:0000166
GO:GO:0003674GO:GO:0005488GO:GO:0005524PFAM:PF00022PRINTS:PR00190ScanProsite:PS00406
ScanProsite:PS00432ScanProsite:PS01132PANTHER:PTHR11937PANTHER:PTHR11937:SF205SMART:SM00268EnsemblPlantsGene:SORBI_3003G367300
SUPFAM:SSF53067unigene:Sbi.7023UniParc:UPI0001A84EE6RefSeq:XP_002456690.1::
Description
hypothetical protein
Coordinates
chr3:+:68353737..68357152
Molecular Weight (calculated)
41604.0 Da
IEP (calculated)
5.050
GRAVY (calculated)
-0.182
Length
376 amino acids
Sequence
(BLAST)
001: MAEEDVQPLV CDNGTGMVKA GFAGDDAPRA VFPSIVGRPR HTGVMVGMGQ KDAYVGDEAQ SKRGILTLKY PIEHGIVGNW DDMEKIWHHT FYNELRVAPE
101: EHPILLTEAP LNPKANREKM TQIMFETFNC PAMYVAIQAV LSLYASGRTT GIVLDSGDGV SHTVPIYEGY TLPHAILRLD LAGRDLTDNL MKILTERGYS
201: FTTTAEREIV RDIKEKLAYV ALDYDQELET ARTSSTVEKS YELPDGQVIT IGAERFRCPE VLFQPSFIGM ESPGIHEATY NSIMKCDVDI RKDLYGNVVL
301: SGGSTMFPGI GDRMSKEITA LAPSSMKVKV VAPPERKYSV WIGGSILASL STFQQMWISK AEYDESGPGI VHMKCF
Best Arabidopsis Sequence Match ( AT3G46520.1 )
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDH LMKILTERGY
201: SFTTTAEREI VRDMKEKLSY IALDYEQELE TSKTSSSVEK SFELPDGQVI TIGAERFRCP EVLFQPSMIG MENPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFGG IGDRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
Arabidopsis Description
ACT12Actin-12 [Source:UniProtKB/Swiss-Prot;Acc:P53497]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.