Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0137g00280.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G27000.1 | VIT_01s0137g00280.t01 | AT1G13180.1 | 17267444 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g094320.2.1 | Tomato | cytosol | 94.6 | 94.6 |
| KRG94584 | Soybean | cytosol | 94.34 | 94.34 |
| KRH06905 | Soybean | cytosol | 94.09 | 94.09 |
| Bra039097.1-P | Field mustard | cytosol | 92.29 | 92.29 |
| CDY20066 | Canola | cytosol | 92.29 | 92.29 |
| Bra025243.1-P | Field mustard | cytosol | 86.63 | 92.08 |
| CDY00172 | Canola | cytosol | 92.03 | 92.03 |
| AT3G27000.1 | Thale cress | cytosol | 92.03 | 92.03 |
| GSMUA_AchrUn_... | Banana | cytosol | 92.03 | 92.03 |
| Zm00001d022558_P001 | Maize | cytosol | 91.52 | 91.52 |
| EER99952 | Sorghum | cytosol | 91.26 | 91.26 |
| CDY13674 | Canola | cytosol | 91.77 | 90.38 |
| CDY52404 | Canola | cytosol | 91.52 | 90.13 |
| TraesCS3D01G362400.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 88.43 | 88.43 |
| PGSC0003DMT400052197 | Potato | cytosol | 89.72 | 87.47 |
| TraesCS3A01G369400.1 | Wheat | cytosol | 88.43 | 86.0 |
| TraesCS3B01G401300.2 | Wheat | cytosol | 88.17 | 82.45 |
| HORVU4Hr1G007240.3 | Barley | cytosol | 86.89 | 72.07 |
| VIT_12s0178g00200.t01 | Wine grape | cytosol | 43.7 | 45.09 |
| VIT_08s0007g06520.t01 | Wine grape | cytosol | 43.44 | 44.83 |
| VIT_06s0004g04570.t01 | Wine grape | cytosol | 42.93 | 44.41 |
| VIT_13s0019g01240.t01 | Wine grape | cytosol | 42.93 | 44.3 |
| VIT_11s0016g00770.t01 | Wine grape | cytosol | 41.65 | 43.09 |
| VIT_04s0044g00580.t01 | Wine grape | extracellular | 43.7 | 36.96 |
| VIT_01s0137g00280.t01 | Wine grape | cytosol | 34.45 | 31.31 |
| VIT_13s0064g00730.t01 | Wine grape | cytosol | 26.48 | 28.53 |
| VIT_00s0214g00170.t01 | Wine grape | cytosol | 12.34 | 27.43 |
| VIT_11s0016g05490.t01 | Wine grape | cytosol | 28.53 | 25.64 |
| VIT_17s0000g04010.t01 | Wine grape | mitochondrion | 24.94 | 21.95 |
Protein Annotations
| EntrezGene:100242912 | wikigene:100242912 | MapMan:20.2.2.1.1 | Gene3D:3.30.420.40 | Gene3D:3.90.640.10 | InterPro:Actin |
| InterPro:Arp2 | ProteinID:CBI21320 | ProteinID:CBI21320.3 | UniProt:D7SVM1 | EMBL:FN595232 | GO:GO:0000166 |
| GO:GO:0000902 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005856 | GO:GO:0005885 | GO:GO:0007015 | GO:GO:0008150 | GO:GO:0009653 |
| GO:GO:0009825 | GO:GO:0009987 | GO:GO:0010090 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0030154 |
| GO:GO:0034314 | GO:GO:0040007 | EntrezGene:LOC100242912 | wikigene:LOC100242912 | PFAM:PF00022 | PRINTS:PR00190 |
| PANTHER:PTHR11937 | PANTHER:PTHR11937:SF149 | SMART:SM00268 | SUPFAM:SSF53067 | UniParc:UPI000198495E | ArrayExpress:VIT_14s0068g01630 |
| EnsemblPlantsGene:VIT_14s0068g01630 | EnsemblPlants:VIT_14s0068g01630.t01 | unigene:Vvi.16449 | RefSeq:XP_002272485 | RefSeq:XP_002272485.1 | : |
Description
No Description!
Coordinates
chr14:-:25325982..25334360
Molecular Weight (calculated)
44161.5 Da
IEP (calculated)
5.497
GRAVY (calculated)
-0.202
Length
389 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNRNVVVCD NGTGYVKCGF AGENFPTSVF PCVVGRPLLR YEESLMEQQL KDIIVGEGCA ELRHQLDISY PVNNGIVQNW DDMGHIWDHA FFKELKIDPT
101: ECKILLTDPP LNPSKNRERM VETMFEKYNF AGVFIQIQAV LTLYAQGLLT GLVIDSGDGV THVVPVVDGY SFPHLTKRMN VAGRHITSYL VDLLSRRGYA
201: MNRTADFETV REIKEKLCYI SYDYKREYQL GLETTILVKN YTLPDGRVIK VGTERFQAPE ALFTPELIDV EGDGMADMVF RCIQEMDIDN RMMLYQHIVL
301: SGGSTMYPGL PSRLEKEILD RYLEVVLKGN KDGLKKLRLR IEDPPRRKHM VYLGGAVLAG IMKDAPEFWI SRQDYLEEGT ACLSKCGAA
101: ECKILLTDPP LNPSKNRERM VETMFEKYNF AGVFIQIQAV LTLYAQGLLT GLVIDSGDGV THVVPVVDGY SFPHLTKRMN VAGRHITSYL VDLLSRRGYA
201: MNRTADFETV REIKEKLCYI SYDYKREYQL GLETTILVKN YTLPDGRVIK VGTERFQAPE ALFTPELIDV EGDGMADMVF RCIQEMDIDN RMMLYQHIVL
301: SGGSTMYPGL PSRLEKEILD RYLEVVLKGN KDGLKKLRLR IEDPPRRKHM VYLGGAVLAG IMKDAPEFWI SRQDYLEEGT ACLSKCGAA
001: MDNKNVVVCD NGTGYVKCGF AGENFPTSVF PCVVGRPLLR YEESLMEQQV KDIVVGETCS ELRHQLDINY PVHNGIVQNW DDMEHVWDHA FYNELKINPS
101: DCKILLTDPP LNPSKNREKM IETMFEKYNF AGVFIQIQAV LTLYAQGLLT GLVIDSGDGV THVVPVVDGY SFPHLTKRMN VAGRHITAYL VDLLSRRGYA
201: MNKTADFETV REIKEKLCYI SYDYKRESQL GLETTILVKN YTLPDGRVIK VGTERFQAPE ALFTPELIDV EGDGMADMVF RCIQEMDIDN RMMLYQHIVL
301: SGGSTMYPGL PSRLEKEIQD RYLDTVLKGN KDGLKKLRLR IEDPPRRKHM VYLGGAVLAG IMKDAPEFWI NREDYMEEGI NCLNKMSQA
101: DCKILLTDPP LNPSKNREKM IETMFEKYNF AGVFIQIQAV LTLYAQGLLT GLVIDSGDGV THVVPVVDGY SFPHLTKRMN VAGRHITAYL VDLLSRRGYA
201: MNKTADFETV REIKEKLCYI SYDYKRESQL GLETTILVKN YTLPDGRVIK VGTERFQAPE ALFTPELIDV EGDGMADMVF RCIQEMDIDN RMMLYQHIVL
301: SGGSTMYPGL PSRLEKEIQD RYLDTVLKGN KDGLKKLRLR IEDPPRRKHM VYLGGAVLAG IMKDAPEFWI NREDYMEEGI NCLNKMSQA
Arabidopsis Description
ARP2Actin-related protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSD6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.