Factsheet for GSMUA_Achr1P20200_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P34320_001	Banana	cytosol	68.59	97.54
GSMUA_Achr1P05990_001	Banana	plasma membrane	98.27	90.45
GSMUA_Achr9P03170_001	Banana	cytosol	96.54	89.1
GSMUA_Achr8P02660_001	Banana	cytosol	96.25	88.59
Os10t0510000-01	Rice	plastid	95.97	88.33
GSMUA_Achr2P16160_001	Banana	cytosol	95.97	88.33
GSMUA_Achr10P...	Banana	cytosol	83.57	88.15
Zm00001d032480_P002	Maize	plasma membrane, plastid	95.68	88.06
Zm00001d013873_P001	Maize	plasma membrane, plastid	95.68	88.06
TraesCS1D01G177400.1	Wheat	cytosol	95.68	88.06
TraesCS1B01G201400.1	Wheat	cytosol	95.68	88.06
HORVU1Hr1G047440.2	Barley	cytosol	95.68	88.06
GSMUA_Achr11P...	Banana	cytosol	95.68	88.06
EER93954	Sorghum	cytosol	95.68	88.06
GSMUA_Achr10P...	Banana	cytosol	95.68	88.06
GSMUA_Achr3P20240_001	Banana	cytosol	76.08	88.0
GSMUA_Achr8P16150_001	Banana	cytosol	95.39	87.8
GSMUA_Achr6P25350_001	Banana	cytosol	95.39	87.8
GSMUA_Achr7P10410_001	Banana	cytosol	95.39	87.8
GSMUA_Achr6P02480_001	Banana	cytosol	74.93	87.54
GSMUA_Achr3P02960_001	Banana	cytosol	95.1	87.53
GSMUA_Achr5P29190_001	Banana	cytosol	87.61	87.36
GSMUA_Achr9P08850_001	Banana	cytosol	87.61	87.11
GSMUA_AchrUn_...	Banana	plasma membrane	94.52	87.0
GSMUA_Achr11P...	Banana	cytosol	87.03	86.53
GSMUA_Achr10P...	Banana	cytosol	65.42	86.31
GSMUA_Achr4P31250_001	Banana	cytosol	93.37	85.94
CDX87810	Canola	cytosol	93.08	85.68
GSMUA_Achr2P15150_001	Banana	cytosol	85.01	84.53
GSMUA_Achr10P...	Banana	cytosol	66.86	84.36
GSMUA_Achr7P18630_001	Banana	cytosol	74.35	80.62
GSMUA_Achr2P08030_001	Banana	cytosol	76.37	75.71
TraesCS1A01G179000.1	Wheat	cytosol	90.2	69.56
GSMUA_AchrUn_...	Banana	cytosol	44.96	40.1
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	29.68	35.4
GSMUA_Achr8P16860_001	Banana	endoplasmic reticulum	43.52	31.92
GSMUA_Achr9P07630_001	Banana	cytosol	37.18	30.14
GSMUA_Achr8P01270_001	Banana	cytosol	36.6	29.74
GSMUA_Achr6P21120_001	Banana	cytosol	36.02	29.27
GSMUA_Achr2P05960_001	Banana	cytosol	25.65	29.09
GSMUA_AchrUn_...	Banana	cytosol	34.01	27.13
GSMUA_Achr2P05970_001	Banana	cytosol	12.39	24.29

Protein Annotations

EnsemblPlants:GSMUA_Achr1P20200_001	EnsemblPlants:GSMUA_Achr1T20200_001	EnsemblPlantsGene:GSMUA_Achr1G20200_001	Gene3D:3.30.420.40	Gene3D:3.30.420.520	Gene3D:3.90.640.10
InterPro:Actin	InterPro:Actin_CS	PANTHER:PTHR11937	PANTHER:PTHR11937:SF252	PFAM:PF00022	PRINTS:PR00190
ScanProsite:PS00406	ScanProsite:PS00432	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI000294DB8A	UniProt:M0S1H8
MapMan:20.2.1	:	:	:	:	:

Description

Actin-1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G20200_001]

Coordinates

chr1:-:15154606..15158313

Molecular Weight (calculated)

38004.8 Da

IEP (calculated)

5.467

GRAVY (calculated)

-0.107

Length

347 amino acids

Sequence
(BLAST)

001: MADTDDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVKA PLNPKANREK MTQIMFESFD
101: VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDS LMKILTERGY SFTTSAEREI VRDIKEKLAY VALDYEQELE
201: AARTSSTVEK SYELPDGQVI TIGAERFRCP EVLFQPSLIG MESAGIHETT YNSIMKCDVD IRRDLYGNIV LSGGSTMFPG IADRMSKEIT ALAPSSMKIK
301: VVAPPERKYS VWIGGSILAS LSTFQQMWIS KAEYEESGPA IVHRKCF

Best Arabidopsis Sequence Match ( AT2G37620.2 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.