Factsheet for Os10t0510000-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 5
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

plastid: 17189339
golgi: 25047511
plastid: 27992503
plasma membrane: 28056797

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93954	Sorghum	cytosol	98.94	98.94
Zm00001d013873_P001	Maize	plasma membrane, plastid	98.94	98.94
TraesCS1D01G177400.1	Wheat	cytosol	98.94	98.94
HORVU1Hr1G047440.2	Barley	cytosol	98.94	98.94
TraesCS1B01G201400.1	Wheat	cytosol	98.94	98.94
Zm00001d032480_P002	Maize	plasma membrane, plastid	98.67	98.67
GSMUA_Achr1P05990_001	Banana	plasma membrane	97.35	97.35
Os11t0163100-01	Rice	nucleus, plasma membrane, plastid	97.35	97.35
Os05t0106600-01	Rice	nucleus	97.08	97.08
Os03t0836000-01	Rice	plasma membrane, plastid	96.29	96.29
Os01t0964133-01	Rice	plasma membrane	96.02	96.02
GSMUA_Achr1P20200_001	Banana	cytosol	88.33	95.97
Os12t0163700-01	Rice	plastid	91.78	95.32
CDX87810	Canola	cytosol	95.23	95.23
Os03t0718100-01	Rice	plasma membrane	94.96	94.96
Os05t0438800-01	Rice	plasma membrane, plastid	92.57	92.82
TraesCS1A01G179000.1	Wheat	cytosol	93.63	78.44
Os01t0866100-01	Rice	plasma membrane	37.67	69.95
Os08t0137200-01	Rice	nucleus	41.91	35.67
Os03t0783000-01	Rice	cytosol, nucleus	33.42	35.0
Os08t0128300-01	Rice	cytosol	16.45	34.44
Os02t0596900-01	Rice	cytosol	38.46	33.88
Os01t0269900-01	Rice	cytosol	32.89	28.9

Protein Annotations

MapMan:20.2.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	EntrezGene:4349087	UniProt:A3C6D7	ProteinID:AAK84456.1
ProteinID:AAP54566.1	EMBL:AK070531	InterPro:Actin	InterPro:Actin/actin-like_CS	InterPro:Actin_CS	ProteinID:BAF26948.1
ProteinID:BAT11611.1	ProteinID:EAZ16650.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	EnsemblPlantsGene:Os10g0510000
EnsemblPlants:Os10t0510000-01	PFAM:PF00022	PRINTS:PR00190	ScanProsite:PS00406	ScanProsite:PS00432	ScanProsite:PS01132
PANTHER:PTHR11937	PANTHER:PTHR11937:SF252	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI00000AAA7A	RefSeq:XP_015614904.1

Description

Actin 2, Actin1Similar to actin. (Os10t0510000-01)

Coordinates

chr10:+:19606999..19610598

Molecular Weight (calculated)

41682.1 Da

IEP (calculated)

5.166

GRAVY (calculated)

-0.159

Length

377 amino acids

Sequence
(BLAST)

001: MADAEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFS VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDS LMKILTERGY
201: SFTTSAEREI VRDIKEKLAY VALDYEQELE TAKSSSSVEK SYELPDGQVI TIGAERFRCP EVMFQPSLIG MEAPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGSTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS RAEYEESGPA IVHRKCF

Best Arabidopsis Sequence Match ( AT5G09810.1 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDS LMKILTERGY
201: MFTTTAEREI VRDIKEKLAY VALDYEQELE TAKSSSSVEK NYELPDGQVI TIGAERFRCP EVLFQPSLIG MEAPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGSTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KSEYDESGPS IVHRKCF

Arabidopsis Description

ACT7AtACT7 [Source:UniProtKB/TrEMBL;Acc:A0A178UEW4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.