Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 7
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G54580.1 | GSMUA_Achr10P... | AT2G33550.1 | 21798944 |
| AT5G54580.1 | GSMUA_Achr6P16420_001 | AT2G33550.1 | 21798944 |
| AT5G54580.1 | GSMUA_Achr8P00510_001 | AT2G33550.1 | 21798944 |
| AT5G54580.1 | GSMUA_Achr2P05000_001 | AT3G21215.1 | 21798944 |
| AT5G54580.1 | GSMUA_Achr9P19610_001 | AT3G21215.1 | 21798944 |
| AT5G54580.1 | GSMUA_Achr2P15270_001 | AT5G53060.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_19s0014g04770.t01 | Wine grape | mitochondrion | 65.19 | 65.19 |
| GSMUA_Achr11P... | Banana | mitochondrion | 48.15 | 60.19 |
| Zm00001d024675_P001 | Maize | mitochondrion | 61.48 | 59.29 |
| EES14515 | Sorghum | plastid | 61.48 | 59.29 |
| GSMUA_Achr5P26410_001 | Banana | cytosol, mitochondrion, nucleus | 50.37 | 59.13 |
| Os08t0139000-02 | Rice | mitochondrion | 60.74 | 58.16 |
| Bra002976.1-P | Field mustard | mitochondrion | 42.96 | 55.77 |
| KRH25927 | Soybean | mitochondrion, plastid | 58.52 | 54.48 |
| Solyc07g063900.2.1 | Tomato | plastid | 60.74 | 54.3 |
| KRH55574 | Soybean | mitochondrion, plastid | 57.04 | 53.1 |
| PGSC0003DMT400049607 | Potato | plastid | 61.48 | 52.87 |
| TraesCS7B01G207500.1 | Wheat | mitochondrion | 59.26 | 52.63 |
| CDY42466 | Canola | plastid | 59.26 | 52.29 |
| Bra029020.1-P | Field mustard | plastid | 58.52 | 51.63 |
| TraesCS7A01G307200.1 | Wheat | plastid | 58.52 | 51.63 |
| CDY64931 | Canola | plastid | 58.52 | 51.63 |
| CDY43035 | Canola | plastid | 58.52 | 51.63 |
| AT5G54580.1 | Thale cress | mitochondrion, plastid | 59.26 | 51.28 |
| CDY43820 | Canola | plastid | 58.52 | 50.32 |
| GSMUA_Achr6P15340_001 | Banana | plastid | 42.96 | 32.95 |
| GSMUA_Achr6P34250_001 | Banana | mitochondrion | 26.67 | 32.73 |
| GSMUA_Achr6P35640_001 | Banana | nucleus | 31.11 | 30.22 |
| GSMUA_Achr5P15860_001 | Banana | plastid | 36.3 | 28.82 |
| GSMUA_Achr2P19090_001 | Banana | mitochondrion | 20.74 | 26.42 |
| GSMUA_Achr7P02750_001 | Banana | mitochondrion | 28.89 | 26.0 |
| GSMUA_Achr7P27650_001 | Banana | nucleus | 22.22 | 22.56 |
| GSMUA_Achr11P... | Banana | mitochondrion | 20.74 | 21.21 |
| GSMUA_Achr4P16080_001 | Banana | mitochondrion | 29.63 | 21.05 |
| GSMUA_Achr5P26170_001 | Banana | nucleus, peroxisome, plasma membrane | 25.19 | 20.24 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 22.96 | 19.62 |
| GSMUA_Achr8P05200_001 | Banana | cytosol | 21.48 | 18.71 |
| GSMUA_Achr8P07840_001 | Banana | mitochondrion, nucleus, plasma membrane | 25.93 | 18.32 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 22.22 | 17.65 |
| GSMUA_Achr9P07090_001 | Banana | mitochondrion | 30.37 | 17.23 |
| GSMUA_Achr3P22540_001 | Banana | nucleus, peroxisome, plasma membrane | 25.93 | 17.07 |
| GSMUA_Achr4P03230_001 | Banana | mitochondrion | 29.63 | 15.62 |
| GSMUA_Achr2P01230_001 | Banana | nucleus | 31.11 | 13.46 |
| GSMUA_Achr2P12550_001 | Banana | nucleus | 20.0 | 12.05 |
| GSMUA_Achr4P22370_001 | Banana | nucleus | 21.48 | 9.32 |
| GSMUA_Achr4P28550_001 | Banana | cytosol, mitochondrion, nucleus | 21.48 | 8.41 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P07380_001 | EnsemblPlants:GSMUA_Achr8T07380_001 | EnsemblPlantsGene:GSMUA_Achr8G07380_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR15241 | PANTHER:PTHR15241:SF8 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000294B292 | UniProt:M0TNE1 | MapMan:16.12.5.2 | : |
Description
RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G07380_001]
Coordinates
chr8:-:4877013..4881315
Molecular Weight (calculated)
14538.2 Da
IEP (calculated)
9.658
GRAVY (calculated)
-0.232
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAMRSGFRR LFSISAFTPP TPAAAAPPAE PSTNLFISGE TLRTTSEGLR EAFSKFGQIV YARVVTDRIS GFSKGFGFVR YATLEEAAEG IKGMDGKFLD
101: GWVIFAEYAR PRLPPSGPTQ PQTPPPQTSE PSSGF
101: GWVIFAEYAR PRLPPSGPTQ PQTPPPQTSE PSSGF
001: MAMAMRLPAI SRAVTEVASA PVGLRRLFCS NASRFSFLSP QAESQTPARP QAEPSTNLFV SGLSKRTTSE GLRTAFAQFG EVADAKVVTD RVSGYSKGFG
101: FVRYATLEDS AKGIAGMDGK FLDGWVIFAE YARPREQSQS YQPQNNMSRP PYYGNR
101: FVRYATLEDS AKGIAGMDGK FLDGWVIFAE YARPREQSQS YQPQNNMSRP PYYGNR
Arabidopsis Description
ORRM2Organelle RRM domain-containing protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FIU6]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.