Factsheet for VIT_19s0014g04770.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	mitochondrion	54.81	68.52
Solyc07g063900.2.1	Tomato	plastid	73.33	65.56
GSMUA_Achr5P26410_001	Banana	cytosol, mitochondrion, nucleus	55.56	65.22
GSMUA_Achr8P07380_001	Banana	mitochondrion	65.19	65.19
PGSC0003DMT400049607	Potato	plastid	73.33	63.06
VIT_08s0007g00070.t01	Wine grape	mitochondrion	54.07	54.89
VIT_08s0040g03330.t01	Wine grape	plastid	48.89	47.14
VIT_08s0007g02860.t01	Wine grape	mitochondrion	40.0	40.6
VIT_06s0004g04260.t01	Wine grape	mitochondrion	28.15	35.85
VIT_06s0080g00870.t01	Wine grape	plastid	25.93	31.53
VIT_05s0029g00440.t01	Wine grape	mitochondrion, nucleus, plastid	34.07	30.26
VIT_05s0094g00380.t01	Wine grape	mitochondrion	21.48	26.36
VIT_12s0059g01210.t01	Wine grape	mitochondrion	26.67	25.71
VIT_17s0053g00760.t01	Wine grape	plastid	25.93	22.01
VIT_03s0063g02610.t01	Wine grape	nucleus	24.44	20.37
VIT_17s0000g07330.t01	Wine grape	plastid	32.59	15.88
VIT_18s0166g00180.t01	Wine grape	mitochondrion	31.85	15.09
VIT_08s0007g04870.t01	Wine grape	cytosol	22.96	12.5
VIT_13s0019g05080.t01	Wine grape	nucleus	22.22	10.79
VIT_13s0106g00500.t01	Wine grape	plastid	28.89	9.54

Protein Annotations

EntrezGene:100253846	wikigene:100253846	MapMan:16.12.5.2	Gene3D:3.30.70.330	UniProt:A5B311	EMBL:AM444850
ProteinID:CAN78606	ProteinID:CAN78606.1	ProteinID:CBI20473	ProteinID:CBI20473.3	EMBL:FN595229	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100253846
wikigene:LOC100253846	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45392	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TIGR:TC52438	UniParc:UPI0001524047	ArrayExpress:VIT_19s0014g04770
EnsemblPlantsGene:VIT_19s0014g04770	EnsemblPlants:VIT_19s0014g04770.t01	RefSeq:XP_002283144	RefSeq:XP_002283144.1	SEG:seg	:

Description

No Description!

Coordinates

chr19:+:5068272..5077083

Molecular Weight (calculated)

14461.2 Da

IEP (calculated)

10.579

GRAVY (calculated)

-0.260

Length

135 amino acids

Sequence
(BLAST)

001: MAMRAAAAAP RSLRRLFSTS TFIPPPITAA TPATPPAEPS TNLFVSGLSK RTTSEGLHEA FSKFGQVVNA RVVTDRVSGY SKGFGFVRYV SLEDAAEGIK
101: GMDGKFLDGW VIFAEYARPR PPPSPQNNGA PPYGR

Best Arabidopsis Sequence Match ( AT5G54580.1 )
(BLAST)

001: MAMAMRLPAI SRAVTEVASA PVGLRRLFCS NASRFSFLSP QAESQTPARP QAEPSTNLFV SGLSKRTTSE GLRTAFAQFG EVADAKVVTD RVSGYSKGFG
101: FVRYATLEDS AKGIAGMDGK FLDGWVIFAE YARPREQSQS YQPQNNMSRP PYYGNR

Arabidopsis Description

ORRM2Organelle RRM domain-containing protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FIU6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.