Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- nucleus 1
- mitochondrion 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_12s0028g02240.t01 | |
| VIT_18s0001g09830.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G27330.1 | VIT_12s0028g02240.t01 | AT2G42580.1 | 19000166 |
| AT2G27330.1 | VIT_18s0001g09830.t01 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0007g02860.t01 | Wine grape | mitochondrion | 57.66 | 48.12 |
| AT2G27330.1 | Thale cress | mitochondrion | 46.85 | 44.83 |
| KRH27720 | Soybean | endoplasmic reticulum, mitochondrion | 38.74 | 44.33 |
| KRH77758 | Soybean | mitochondrion | 43.24 | 42.48 |
| GSMUA_Achr6P35640_001 | Banana | nucleus | 51.35 | 41.01 |
| CDY31170 | Canola | mitochondrion, nucleus | 45.05 | 37.88 |
| Bra000516.1-P | Field mustard | mitochondrion | 45.05 | 37.31 |
| CDX83260 | Canola | mitochondrion | 45.05 | 37.31 |
| VIT_06s0004g04260.t01 | Wine grape | mitochondrion | 34.23 | 35.85 |
| Os04t0414300-00 | Rice | mitochondrion | 44.14 | 35.77 |
| TraesCS2B01G312500.1 | Wheat | mitochondrion | 43.24 | 34.53 |
| TraesCS2D01G294000.1 | Wheat | mitochondrion | 43.24 | 34.53 |
| EES10764 | Sorghum | mitochondrion | 41.44 | 34.07 |
| TraesCS2A01G296100.1 | Wheat | mitochondrion | 42.34 | 33.81 |
| HORVU2Hr1G073330.9 | Barley | cytosol, nucleus | 38.74 | 31.62 |
| VIT_08s0040g03330.t01 | Wine grape | plastid | 38.74 | 30.71 |
| VIT_05s0094g00380.t01 | Wine grape | mitochondrion | 29.73 | 30.0 |
| VIT_12s0059g01210.t01 | Wine grape | mitochondrion | 33.33 | 26.43 |
| VIT_05s0029g00440.t01 | Wine grape | mitochondrion, nucleus, plastid | 36.04 | 26.32 |
| VIT_19s0014g04770.t01 | Wine grape | mitochondrion | 31.53 | 25.93 |
| VIT_17s0053g00760.t01 | Wine grape | plastid | 31.53 | 22.01 |
| VIT_08s0007g00070.t01 | Wine grape | mitochondrion | 26.13 | 21.8 |
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 29.73 | 20.37 |
| VIT_17s0000g07330.t01 | Wine grape | plastid | 36.94 | 14.8 |
| VIT_13s0106g00500.t01 | Wine grape | plastid | 44.14 | 11.98 |
| VIT_18s0166g00180.t01 | Wine grape | mitochondrion | 30.63 | 11.93 |
| VIT_08s0007g04870.t01 | Wine grape | cytosol | 25.23 | 11.29 |
| VIT_13s0019g05080.t01 | Wine grape | nucleus | 23.42 | 9.35 |
Protein Annotations
| EntrezGene:100854881 | wikigene:100854881 | Gene3D:3.30.70.330 | MapMan:35.1 | ProteinID:CBI28286 | ProteinID:CBI28286.3 |
| UniProt:D7TCR3 | EMBL:FN595757 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | EntrezGene:LOC100854881 | wikigene:LOC100854881 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR45502 | PANTHER:PTHR45502:SF2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk |
| SMART:SM00360 | SMART:SM00361 | SUPFAM:SSF54928 | UniParc:UPI0001BE3408 | ArrayExpress:VIT_06s0080g00870 | EnsemblPlantsGene:VIT_06s0080g00870 |
| EnsemblPlants:VIT_06s0080g00870.t01 | unigene:Vvi.22884 | RefSeq:XP_003632289 | RefSeq:XP_003632289.1 | : | : |
Description
No Description!
Coordinates
chr6:+:20917185..20921182
Molecular Weight (calculated)
12437.1 Da
IEP (calculated)
9.105
GRAVY (calculated)
0.059
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MASFRGISDT FLRFSSLNPY LLSSQLIFCR GIASTLFVKG ISFSTTEKTL AEAFSQFGEV VEAKIIMDKR KLRPKGFAYV TFTREDEAEK ALTEMNGKVV
101: DGRTVLVDYA M
101: DGRTVLVDYA M
001: MLTQFLYRSF TPLLFSRSFS STLFVKGISF SSTEETLTQA FSQYGQVLKV DVIMDKIRCR PKGFAYVTFS SKEEAEKALL ELNAQLVDGR VVILDTTKAA
101: KHNPPDTKPN HAGGDS
101: KHNPPDTKPN HAGGDS
Arabidopsis Description
At2g27330 [Source:UniProtKB/TrEMBL;Acc:Q1ECN0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.