Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- nucleus 2
- cytosol 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G27330.1 | CDY42827 | AT2G42580.1 | 19000166 |
| AT2G27330.1 | CDY51514 | AT2G42580.1 | 19000166 |
| AT2G27330.1 | CDY55390 | AT2G42580.1 | 19000166 |
| AT2G27330.1 | CDY61202 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83260 | Canola | mitochondrion | 94.7 | 93.28 |
| AT2G27330.1 | Thale cress | mitochondrion | 71.97 | 81.9 |
| VIT_06s0080g00870.t01 | Wine grape | plastid | 37.88 | 45.05 |
| KRH27720 | Soybean | endoplasmic reticulum, mitochondrion | 26.52 | 36.08 |
| KRH77758 | Soybean | mitochondrion | 30.3 | 35.4 |
| CDY09244 | Canola | mitochondrion | 26.52 | 33.65 |
| CDY04982 | Canola | mitochondrion | 37.12 | 33.56 |
| EES10764 | Sorghum | mitochondrion | 34.09 | 33.33 |
| Os04t0414300-00 | Rice | mitochondrion | 34.09 | 32.85 |
| CDX82066 | Canola | cytosol, nucleus, plastid | 23.48 | 32.29 |
| CDY14089 | Canola | mitochondrion | 35.61 | 32.19 |
| TraesCS2D01G294000.1 | Wheat | mitochondrion | 32.58 | 30.94 |
| TraesCS2A01G296100.1 | Wheat | mitochondrion | 31.82 | 30.22 |
| TraesCS2B01G312500.1 | Wheat | mitochondrion | 31.82 | 30.22 |
| HORVU2Hr1G073330.9 | Barley | cytosol, nucleus | 31.06 | 30.15 |
| GSMUA_Achr6P35640_001 | Banana | nucleus | 31.06 | 29.5 |
| CDY31588 | Canola | nucleus | 16.67 | 28.21 |
| CDY42466 | Canola | plastid | 27.27 | 23.53 |
| CDX82164 | Canola | mitochondrion | 25.76 | 23.45 |
| CDY46213 | Canola | nucleus | 21.21 | 22.95 |
| CDY28003 | Canola | plastid | 25.0 | 22.92 |
| CDY43035 | Canola | plastid | 26.52 | 22.88 |
| CDY64931 | Canola | plastid | 26.52 | 22.88 |
| CDY35978 | Canola | mitochondrion, plastid | 24.24 | 22.38 |
| CDY43820 | Canola | plastid | 26.52 | 22.29 |
| CDY47311 | Canola | mitochondrion | 22.73 | 20.83 |
| CDX91368 | Canola | plastid | 22.73 | 20.69 |
| CDX74955 | Canola | plastid | 22.73 | 20.69 |
| CDY19230 | Canola | mitochondrion | 21.21 | 20.14 |
| CDY51614 | Canola | mitochondrion | 21.97 | 20.0 |
| CDY47314 | Canola | mitochondrion | 22.73 | 20.0 |
| CDY53035 | Canola | mitochondrion | 22.73 | 19.87 |
| CDY06468 | Canola | mitochondrion | 21.97 | 19.59 |
| CDY08312 | Canola | mitochondrion | 21.97 | 18.95 |
| CDY26743 | Canola | mitochondrion | 21.21 | 18.92 |
| CDY41969 | Canola | cytosol | 18.18 | 18.75 |
| CDX71070 | Canola | mitochondrion | 20.45 | 17.76 |
| CDY65478 | Canola | endoplasmic reticulum | 26.52 | 16.83 |
| CDX71276 | Canola | nucleus | 21.21 | 16.28 |
| CDY59763 | Canola | nucleus | 20.45 | 16.17 |
| CDY12133 | Canola | cytosol | 18.94 | 15.82 |
| CDY70933 | Canola | nucleus | 19.7 | 15.48 |
| CDY42426 | Canola | mitochondrion | 28.03 | 15.29 |
| CDY42616 | Canola | cytosol | 18.18 | 15.29 |
| CDX90323 | Canola | plastid | 18.18 | 14.55 |
| CDY15876 | Canola | nucleus | 18.18 | 14.2 |
| CDY16825 | Canola | plastid | 28.03 | 14.07 |
| CDY49123 | Canola | mitochondrion | 28.03 | 13.91 |
| CDX73070 | Canola | mitochondrion | 28.03 | 13.7 |
| CDY72366 | Canola | nucleus | 17.42 | 13.45 |
| CDX96526 | Canola | mitochondrion | 28.03 | 13.31 |
| CDX87197 | Canola | plastid | 28.03 | 11.25 |
| CDY02175 | Canola | mitochondrion | 28.79 | 11.21 |
| CDX83617 | Canola | nucleus | 19.7 | 11.21 |
| CDY13632 | Canola | nucleus | 19.7 | 10.88 |
| CDY48990 | Canola | nucleus | 19.7 | 10.7 |
| CDY52166 | Canola | nucleus | 18.94 | 10.29 |
| CDY19589 | Canola | plastid | 23.48 | 8.31 |
| CDY06395 | Canola | nucleus | 23.48 | 7.79 |
| CDY11283 | Canola | nucleus | 17.42 | 7.52 |
| CDY34132 | Canola | nucleus | 12.88 | 6.67 |
| CDX80910 | Canola | nucleus | 9.85 | 4.98 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078GXI7 | UniProt:A0A078GXI7 | EnsemblPlants:CDY31170 | ProteinID:CDY31170 |
| ProteinID:CDY31170.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00047263001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45502 |
| PANTHER:PTHR45502:SF2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00360 | SMART:SM00361 |
| SUPFAM:SSF54928 | UniParc:UPI0004EEB79B | SEG:seg | : | : | : |
Description
BnaC03g47210DBnaC03g47210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GXI7]
Coordinates
chrLK032268:-:63829..65536
Molecular Weight (calculated)
14662.4 Da
IEP (calculated)
8.489
GRAVY (calculated)
-0.276
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MLNHLLYRSH TPSLLFSRTF SSSSTLFVKG ISFSSTEETL TQAFSQYGRV LGVDVVMDEV RCRPKGFAYV TFSSKEEAAK ALLELNGQLV DGRVVILDTT
101: KAVKQNRPDS KRKHADAVEE VPNSQHVVTP ES
101: KAVKQNRPDS KRKHADAVEE VPNSQHVVTP ES
001: MLTQFLYRSF TPLLFSRSFS STLFVKGISF SSTEETLTQA FSQYGQVLKV DVIMDKIRCR PKGFAYVTFS SKEEAEKALL ELNAQLVDGR VVILDTTKAA
101: KHNPPDTKPN HAGGDS
101: KHNPPDTKPN HAGGDS
Arabidopsis Description
At2g27330 [Source:UniProtKB/TrEMBL;Acc:Q1ECN0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.