Factsheet for VIT_05s0029g00440.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g092320.2.1	Tomato	mitochondrion, nucleus	51.97	68.1
KRG97345	Soybean	mitochondrion	62.5	67.38
GSMUA_Achr7P02750_001	Banana	mitochondrion	64.47	65.33
PGSC0003DMT400040748	Potato	mitochondrion	61.84	64.83
PGSC0003DMT400053017	Potato	mitochondrion, plastid	63.82	63.82
AT3G23830.1	Thale cress	mitochondrion, plastid	54.61	61.03
Solyc05g053780.2.1	Tomato	mitochondrion	63.82	60.25
CDY06468	Canola	mitochondrion	58.55	60.14
AT4G13850.1	Thale cress	mitochondrion	62.5	60.13
CDY47314	Canola	mitochondrion	58.55	59.33
Bra037056.1-P	Field mustard	mitochondrion	58.55	59.33
CDY47311	Canola	mitochondrion	55.92	59.03
CDY53035	Canola	mitochondrion	58.55	58.94
Bra013997.1-P	Field mustard	mitochondrion	55.92	58.62
CDY08312	Canola	mitochondrion	58.55	58.17
KRH31570	Soybean	mitochondrion	53.29	55.86
GSMUA_Achr4P16080_001	Banana	mitochondrion	67.76	54.21
VIT_12s0059g01210.t01	Wine grape	mitochondrion	37.5	40.71
VIT_03s0063g02610.t01	Wine grape	nucleus	42.76	40.12
Bra014000.1-P	Field mustard	mitochondrion	58.55	40.09
VIT_08s0007g02860.t01	Wine grape	mitochondrion	31.58	36.09
VIT_06s0080g00870.t01	Wine grape	plastid	26.32	36.04
VIT_05s0094g00380.t01	Wine grape	mitochondrion	25.66	35.45
VIT_08s0040g03330.t01	Wine grape	plastid	32.24	35.0
VIT_19s0014g04770.t01	Wine grape	mitochondrion	30.26	34.07
VIT_06s0004g04260.t01	Wine grape	mitochondrion	23.68	33.96
VIT_17s0000g07330.t01	Wine grape	plastid	57.89	31.77
VIT_08s0007g00070.t01	Wine grape	mitochondrion	24.34	27.82
VIT_18s0166g00180.t01	Wine grape	mitochondrion	37.5	20.0
VIT_08s0007g04870.t01	Wine grape	cytosol	26.97	16.53
VIT_13s0019g05080.t01	Wine grape	nucleus	28.95	15.83
VIT_17s0053g00760.t01	Wine grape	plastid	15.79	15.09
VIT_13s0106g00500.t01	Wine grape	plastid	25.0	9.29

Protein Annotations

EntrezGene:100247038	wikigene:100247038	MapMan:16.12.5.2	Gene3D:3.30.70.330	UniProt:A5C101	EMBL:AM478333
ProteinID:CAN75185	ProteinID:CAN75185.1	ProteinID:CBI17290	ProteinID:CBI17290.3	EMBL:FN594958	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100247038
wikigene:LOC100247038	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44202	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TIGR:TC59739	UniParc:UPI0001522507	ArrayExpress:VIT_05s0029g00440
EnsemblPlantsGene:VIT_05s0029g00440	EnsemblPlants:VIT_05s0029g00440.t01	unigene:Vvi.12251	unigene:Vvi.2562	RefSeq:XP_002264895	RefSeq:XP_002264895.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:-:15132883..15137706

Molecular Weight (calculated)

15611.9 Da

IEP (calculated)

8.718

GRAVY (calculated)

-0.439

Length

152 amino acids

Sequence
(BLAST)

001: MAFCNRFGNL LRQSISQNSA SKGQGSMGAL LNSIRCMSSA KLFIGGLSYG TDDQSLKDAF SSFGDVVEAR VITDRDTGRS RGFGFVNFTS DDSASSALSA
101: MDGQELNGRN IRVSYANERT PGPRSGGSGG GFGGGYRGNG GYGGGAGGND GF

Best Arabidopsis Sequence Match ( AT4G13850.3 )
(BLAST)

001: MAFCNKLGGL LRQNISSNGN VPVTSMLGSL RLMSTKLFIG GLSWGTDDAS LRDAFAHFGD VVDAKVIVDR ETGRSRGFGF VNFNDEGAAT AAISEMDGKE
101: LNGRHIRVNP ANDRPSAPRA YGGGGGYSGG GGGYGGGGDG GGGF

Arabidopsis Description

RBG2Glycine-rich RNA-binding protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SVM8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.