CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034768_P005	Maize	nucleus	97.99	95.12
Os03t0836200-03	Rice	nucleus	93.97	91.22
TraesCS4A01G355700.1	Wheat	nucleus	84.92	80.09
TraesCS5D01G516500.1	Wheat	nucleus	86.93	77.93
TraesCS5B01G516400.1	Wheat	nucleus	84.42	76.71
KXG24163	Sorghum	nucleus	75.88	69.27
KRH42209	Soybean	endoplasmic reticulum	59.8	67.61
PGSC0003DMT400076497	Potato	nucleus	69.35	67.32
PGSC0003DMT400045627	Potato	nucleus	71.86	66.82
KRH58335	Soybean	nucleus	67.34	64.42
Solyc10g047130.1.1	Tomato	nucleus	70.85	59.0
Bra025205.1-P	Field mustard	nucleus	67.34	57.76
CDX83617	Canola	nucleus	67.34	57.76
CDY13632	Canola	nucleus	67.84	56.49
HORVU5Hr1G118010.1	Barley	mitochondrion, nucleus	87.94	56.09
Bra032933.1-P	Field mustard	nucleus	67.84	55.56
CDY48990	Canola	nucleus	67.84	55.56
CDY52166	Canola	nucleus	66.33	54.32
AT3G26420.1	Thale cress	nucleus	65.33	53.06
VIT_18s0166g00180.t01	Wine grape	mitochondrion	74.87	52.28
Solyc01g104840.2.1	Tomato	nucleus	56.78	50.67
EES16438	Sorghum	nucleus	40.2	48.48
KXG37870	Sorghum	nucleus	38.69	45.29
GSMUA_Achr5P26170_001	Banana	nucleus, peroxisome, plasma membrane	34.67	41.07
GSMUA_Achr8P07840_001	Banana	mitochondrion, nucleus, plasma membrane	37.69	39.27
EES01954	Sorghum	plastid	25.63	34.69
EER97356	Sorghum	plastid	20.6	31.3
OQU88096	Sorghum	cytosol, mitochondrion, nucleus	10.05	30.77
KXG36665	Sorghum	mitochondrion	16.08	30.48
OQU88590	Sorghum	nucleus	45.73	30.23
EES14515	Sorghum	plastid	21.11	30.0
KXG32985	Sorghum	cytosol, mitochondrion, nucleus	10.05	29.85
EES10764	Sorghum	mitochondrion	20.1	29.63
KXG37841	Sorghum	nucleus	41.21	25.95
EES16016	Sorghum	mitochondrion	30.65	24.4
EER92461	Sorghum	plastid	20.6	24.26
KXG26990	Sorghum	plastid	17.59	23.81
EES02151	Sorghum	mitochondrion, plastid	16.58	22.6
KXG36643	Sorghum	mitochondrion	27.64	17.41
KXG30823	Sorghum	plastid	16.58	8.23

Protein Annotations

MapMan:16.7.2	Gene3D:3.30.70.330	Gene3D:4.10.60.10	UniProt:A0A1B6QGY8	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0008270	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677
ProteinID:KXG37188.1	EnsemblPlants:KXG37189	ProteinID:KXG37189	ProteinID:KXG37189.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF00098	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR45429	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00343	SMART:SM00360	EnsemblPlantsGene:SORBI_3001G022600	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI0001C80BDA
InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:1823402..1826715

Molecular Weight (calculated)

21535.3 Da

IEP (calculated)

7.897

GRAVY (calculated)

-1.249

Length

199 amino acids

Sequence
(BLAST)

001: MADVDEYRCF IGNLSWSTTD ESLKDAFSKF GNLTEAKVVL DKFSGRSRGF GFVTFDEKQA MEDAIEGMNG LDLDGRNITV DKAQPQGPGR DRNGDRDYDR
101: DRGSRYDRGR DYGSGRAPRG GGGGDCFKCG KPGHFARECP SGDGGRGDRY GGRDDRYGGG GGGGGRYGSE RGGDRYSGRS RDGGSYGGDR YSRDRSGPY

Best Arabidopsis Sequence Match ( AT2G21660.1 )
(BLAST)

001: MASGDVEYRC FVGGLAWATD DRALETAFAQ YGDVIDSKII NDRETGRSRG FGFVTFKDEK AMKDAIEGMN GQDLDGRSIT VNEAQSRGSG GGGGHRGGGG
101: GGYRSGGGGG YSGGGGSYGG GGGRREGGGG YSGGGGGYSS RGGGGGSYGG GRREGGGGYG GGEGGGYGGS GGGGGW

Arabidopsis Description

RBG7Glycine-rich RNA-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q03250]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.