Factsheet for Os03t0836200-03

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 23303719
nucleus: 23777608
nucleus: 26035336
plasma membrane: 27800704

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37189	Sorghum	nucleus	91.22	93.97
Zm00001d034768_P005	Maize	nucleus	92.2	92.2
TraesCS4A01G355700.1	Wheat	nucleus	81.46	79.15
TraesCS5D01G516500.1	Wheat	nucleus	82.93	76.58
TraesCS5B01G516400.1	Wheat	nucleus	80.98	75.8
KRH42209	Soybean	endoplasmic reticulum	60.0	69.89
PGSC0003DMT400076497	Potato	nucleus	68.78	68.78
PGSC0003DMT400045627	Potato	nucleus	70.73	67.76
KRH58335	Soybean	nucleus	67.32	66.35
Solyc10g047130.1.1	Tomato	nucleus	69.76	59.83
Bra025205.1-P	Field mustard	nucleus	66.34	58.62
CDX83617	Canola	nucleus	66.34	58.62
CDY13632	Canola	nucleus	66.83	57.32
Bra032933.1-P	Field mustard	nucleus	67.32	56.79
CDY48990	Canola	nucleus	67.32	56.79
CDY52166	Canola	nucleus	65.85	55.56
HORVU5Hr1G118010.1	Barley	mitochondrion, nucleus	84.39	55.45
AT3G26420.1	Thale cress	nucleus	63.41	53.06
VIT_18s0166g00180.t01	Wine grape	mitochondrion	73.66	52.98
Solyc01g104840.2.1	Tomato	nucleus	54.63	50.22
Os12t0632000-01	Rice	nucleus	37.07	46.91
GSMUA_Achr5P26170_001	Banana	nucleus, peroxisome, plasma membrane	34.63	42.26
GSMUA_Achr8P07840_001	Banana	mitochondrion, nucleus, plasma membrane	36.1	38.74
Os01t0502800-01	Rice	mitochondrion	9.76	37.74
Os01t0916600-01	Rice	mitochondrion	27.32	37.33
Os03t0670700-01	Rice	nucleus	32.68	34.18
Os08t0139000-02	Rice	mitochondrion	20.0	29.08
Os04t0414300-00	Rice	mitochondrion	19.02	28.47
Os03t0681900-01	Rice	nucleus	41.95	27.92
Os07t0549800-01	Rice	mitochondrion	17.56	27.07
Os01t0974701-01	Rice	mitochondrion	14.63	25.86
Os03t0278800-00	Rice	plastid	20.98	24.86
Os12t0502200-01	Rice	mitochondrion	29.76	23.64
Os07t0602600-01	Rice	mitochondrion	26.34	22.69
Os10t0321700-01	Rice	mitochondrion	33.66	21.77
Os04t0583800-01	Rice	plastid	7.8	13.56
Os02t0730800-01	Rice	plastid	16.1	8.27

Protein Annotations

MapMan:16.7.2	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EntrezGene:4334703	ProteinID:AAR88588.1	ProteinID:ABF99756.1
ProteinID:ABF99757.1	ProteinID:ABF99758.1	ProteinID:ABF99759.1	EMBL:AK058443	EMBL:AK067084	EMBL:AK101225
ProteinID:BAF13737.1	ProteinID:BAS87255.1	ProteinID:EAZ29211.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006950	GO:GO:0008150	GO:GO:0008270
GO:GO:0009409	GO:GO:0009628	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
EnsemblPlantsGene:Os03g0836200	EnsemblPlants:Os03t0836200-03	PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158
PANTHER:PTHR45429	UniProt:Q75LJ7	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360
SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI0000232A67	RefSeq:XP_015629763.1	RefSeq:XP_015629764.1	InterPro:Znf_CCHC
InterPro:Znf_CCHC_sf	SEG:seg	:	:	:	:

Description

zinc finger-containing glycine-rich RNA-binding protein 1Similar to RNA-binding protein RZ-1. (Os03t0836200-01);Similar to RNA-binding protein RZ-1. (Os03t0836200-02);Similar to RNA-binding protein RZ-1. (Os03t0836200-03)

Coordinates

chr3:-:35134127..35137259

Molecular Weight (calculated)

21824.7 Da

IEP (calculated)

8.275

GRAVY (calculated)

-1.221

Length

205 amino acids

Sequence
(BLAST)

001: MADVEEYRCF IGNLSWSTTD ESLKDAFGKF GNLTEAKVVF DKYSGRSRGF GFVTFDEKKA MEDAIEGMNG LDLDGRAITV DKAQPQGPGR DRNGDRDYDR
101: DRGSRYDRGR DFGGGGRAPR GSGGGGDCYK CGKPGHFARE CPSGDGGGRG DRYGGRDDRY GGGGGGGGRY GSDRGGDRYS GRSRDGGGYG GGGGDRYSRD
201: RSGPY

Best Arabidopsis Sequence Match ( AT3G26420.1 )
(BLAST)

001: MSEDPEYRCF IGGLAWTTSD RGLRDAFEKY GHLVEAKVVL DKFSGRSRGF GFITFDEKKA MDEAIAAMNG MDLDGRTITV DKAQPHQGGA GRDNDGDRGR
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH

Arabidopsis Description

RZ1AGlycine-rich RNA-binding protein RZ1A [Source:UniProtKB/Swiss-Prot;Acc:Q9LIN3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.