Factsheet for AT1G23860.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59084	Canola	nucleus	63.64	91.54
CDY47646	Canola	nucleus	87.7	88.65
Bra024624.1-P	Field mustard	nucleus	88.24	76.74
KRG99320	Soybean	nucleus	66.84	70.62
KRH45698	Soybean	nucleus	67.38	67.74
AT4G31580.1	Thale cress	nucleus	65.24	61.0
AT2G24590.1	Thale cress	nucleus	62.03	59.18
VIT_01s0026g00250.t01	Wine grape	nucleus	62.57	59.09
GSMUA_AchrUn_...	Banana	nucleus	65.78	56.94
GSMUA_Achr1P09660_001	Banana	nucleus	64.17	54.05

Protein Annotations

MapMan:16.4.6.4	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EntrezGene:838997	UniProt:A0A178WC08	ProteinID:AAF87159.1
ProteinID:AEE30440.1	ProteinID:AEE30441.1	ProteinID:AEE30442.1	ProteinID:AEE30443.1	EMBL:AF033587	EMBL:AJ002377
EMBL:AK317576	ArrayExpress:AT1G23860	EnsemblPlantsGene:AT1G23860	RefSeq:AT1G23860	TAIR:AT1G23860	RefSeq:AT1G23860-TAIR-G
EnsemblPlants:AT1G23860.1	TAIR:AT1G23860.1	Unigene:At.22803	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005681	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0008380	GO:GO:0009987	GO:GO:0016607	GO:GO:0046872
InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	RefSeq:NP_001117342.1	RefSeq:NP_001185074.1	RefSeq:NP_564208.1
RefSeq:NP_973901.1	InterPro:Nucleotide-bd_a/b_plait_sf	UniProt:O81127	ProteinID:OAP15726.1	PFAM:PF00076	PFAM:PF00098
PO:PO:0000005	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293
PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064
PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611
PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PO:PO:0025281	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF23
InterPro:RBD_domain_sf	InterPro:RRM_dom	Symbol:RSZP21	SMART:SM00343	SMART:SM00360	Symbol:SRZ-21
SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI000009FC10	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg

Description

RSZ21SRZ21 [Source:UniProtKB/TrEMBL;Acc:A0A178WC08]

Coordinates

chr1:-:8427257..8429485

Molecular Weight (calculated)

21538.3 Da

IEP (calculated)

11.831

GRAVY (calculated)

-1.354

Length

187 amino acids

Sequence
(BLAST)

001: MTRVYVGNLD PRVTERELED EFKAFGVLRN VWVARRPPGY AFLEFDDERD ALDAISALDR KNGWRVELSH KDKGGRGGGG GRRGGIEDSK CYECGELGHF
101: ARECRRGRGS VRRRSPSPRR RRSPDYGYAR RSISPRGRRS PPRRRSVTPP RRGRSYSRSP PYRGSRRDSP RRRDSPYGRR SPYANGV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.