Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY59084 | Canola | nucleus | 69.73 | 99.23 |
| AT1G23860.1 | Thale cress | nucleus | 88.65 | 87.7 |
| Bra024624.1-P | Field mustard | nucleus | 99.46 | 85.58 |
| KRG99320 | Soybean | nucleus | 70.27 | 73.45 |
| KRH45698 | Soybean | nucleus | 71.89 | 71.51 |
| CDX72313 | Canola | nucleus | 67.03 | 62.94 |
| CDY13444 | Canola | nucleus | 66.49 | 61.81 |
| CDY20328 | Canola | nucleus | 65.41 | 61.73 |
| CDY45585 | Canola | nucleus | 65.41 | 61.73 |
| VIT_01s0026g00250.t01 | Wine grape | nucleus | 65.41 | 61.11 |
| GSMUA_AchrUn_... | Banana | nucleus | 68.65 | 58.8 |
| GSMUA_Achr1P09660_001 | Banana | nucleus | 68.11 | 56.76 |
Protein Annotations
| MapMan:16.4.6.4 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | GO:A0A078ICR0 | UniProt:A0A078ICR0 | EnsemblPlants:CDY47646 |
| ProteinID:CDY47646 | ProteinID:CDY47646.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0008270 | EnsemblPlantsGene:GSBRNA2T00087867001 | InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFAM:PF00098 | PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF23 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00343 | SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF57756 |
| UniParc:UPI0004EF3BD8 | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | SEG:seg | : | : |
Description
BnaC05g19020DBnaC05g19020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ICR0]
Coordinates
chrLK032727:-:78399..80209
Molecular Weight (calculated)
21318.0 Da
IEP (calculated)
11.770
GRAVY (calculated)
-1.378
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRVYVGNLD PRVTERELED EFRIFGVLRN VWVARRPPGY AFLEFDDERD ALDAIRALDG KNGWRVELSH KDKGGRGGGG RRGGIEDSKC YECGEPGHFA
101: RECRRGRGGY GRRRSPSPRR RSPVYGYGRR SISPRGRRSP PRRRSVSPPP PRRYSRSPPP YRSSRRDSPR RRDSPYGRRS PYANG
101: RECRRGRGGY GRRRSPSPRR RSPVYGYGRR SISPRGRRSP PRRRSVSPPP PRRYSRSPPP YRSSRRDSPR RRDSPYGRRS PYANG
001: MTRVYVGNLD PRVTERELED EFKAFGVLRN VWVARRPPGY AFLEFDDERD ALDAISALDR KNGWRVELSH KDKGGRGGGG GRRGGIEDSK CYECGELGHF
101: ARECRRGRGS VRRRSPSPRR RRSPDYGYAR RSISPRGRRS PPRRRSVTPP RRGRSYSRSP PYRGSRRDSP RRRDSPYGRR SPYANGV
101: ARECRRGRGS VRRRSPSPRR RRSPDYGYAR RSISPRGRRS PPRRRSVTPP RRGRSYSRSP PYRGSRRDSP RRRDSPYGRR SPYANGV
Arabidopsis Description
RSZ21SRZ21 [Source:UniProtKB/TrEMBL;Acc:A0A178WC08]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.