Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY59084 | Canola | nucleus | 46.4 | 79.23 |
| KRG99320 | Soybean | nucleus | 60.36 | 75.71 |
| KRH45698 | Soybean | nucleus | 59.91 | 71.51 |
| GSMUA_AchrUn_... | Banana | nucleus | 68.92 | 70.83 |
| VIT_01s0026g00250.t01 | Wine grape | nucleus | 62.61 | 70.2 |
| GSMUA_Achr4P09230_001 | Banana | nucleus | 55.86 | 68.89 |
| CDY47646 | Canola | nucleus | 56.76 | 68.11 |
| GSMUA_Achr8P24800_001 | Banana | nucleus | 55.41 | 67.58 |
| AT1G23860.1 | Thale cress | nucleus | 54.05 | 64.17 |
| Bra024624.1-P | Field mustard | nucleus | 56.76 | 58.6 |
Protein Annotations
| MapMan:16.4.6.4 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0008270 | EnsemblPlantsGene:GSMUA_Achr1G09660_001 | EnsemblPlants:GSMUA_Achr1P09660_001 | EnsemblPlants:GSMUA_Achr1T09660_001 | InterPro:IPR000504 |
| InterPro:IPR001878 | InterPro:IPR012677 | UniProt:M0RYH5 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00098 |
| PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF26 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00343 | SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF57756 | UniParc:UPI00029634AB | InterPro:Znf_CCHC |
| InterPro:Znf_CCHC_sf | SEG:seg | : | : | : | : |
Description
Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G09660_001]
Coordinates
chr1:-:7362156..7367331
Molecular Weight (calculated)
24671.5 Da
IEP (calculated)
11.864
GRAVY (calculated)
-1.440
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRVYVGNLD SRVSERELED EFRAFGVLRS VWVARRPPGY GFVEFDDRRD ALDAIRDIDG KHGWRVELSH NSKAGGGGRG GRGRGGGGGG GGGGDMNCYE
101: CGEPGHFARE CKLRIGTGGL GSGRRRSPSP PRYRRSPSYG RGSRSPRGRR SPRRSYSPRS RSPAYRRDDS PYGNKSPGRD RRRSNSPRRD KSHSRSPPAY
201: RRQDSPPYAN GDGKRSRSRS RS
101: CGEPGHFARE CKLRIGTGGL GSGRRRSPSP PRYRRSPSYG RGSRSPRGRR SPRRSYSPRS RSPAYRRDDS PYGNKSPGRD RRRSNSPRRD KSHSRSPPAY
201: RRQDSPPYAN GDGKRSRSRS RS
001: MSRVYVGNLD PRVTERELED EFRSFGVIRS VWVARRPPGY AFLDFEDSRD ARDAIREVDG KNGWRVEQSH NRGGGGGRGG GRGGGDGGRG RGGSDLKCYE
101: CGESGHFARE CRSRGGSGGR RRSRSRSRSP PRYRKSPTYG GRRSYSPRAR SPPPPRRRSP SPRGRNYSRS PPPYRARDEV PYANGNGLKD VRRSRS
101: CGESGHFARE CRSRGGSGGR RRSRSRSRSP PRYRKSPTYG GRRSYSPRAR SPPPPRRRSP SPRGRNYSRS PPPYRARDEV PYANGNGLKD VRRSRS
Arabidopsis Description
RSZ22ASerine/arginine-rich splicing factor RSZ22A [Source:UniProtKB/Swiss-Prot;Acc:Q9SJA6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.