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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • plastid 4
  • cytosol 1
  • mitochondrion 1
  • extracellular 4
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 3
  • golgi 3
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr5P27470_001 Banana nucleus 16.74 30.83
Solyc01g080660.2.1 Tomato nucleus 22.17 29.52
Zm00001d029256_P002 Maize nucleus 30.32 27.35
AT5G18810.1 Thale cress nucleus 28.96 27.12
KXG39307 Sorghum nucleus 29.41 26.97
KRH02172 Soybean nucleus 30.32 26.8
KRH50944 Soybean nucleus 29.41 26.75
Os03t0363800-01 Rice nucleus 28.96 26.34
GSMUA_Achr4P13560_001 Banana nucleus 24.43 24.88
TraesCS4D01G162900.1 Wheat nucleus 26.7 24.79
HORVU4Hr1G045510.3 Barley nucleus 26.24 24.27
TraesCS4B01G156200.1 Wheat nucleus 26.24 24.27
TraesCS4A01G141800.2 Wheat nucleus 27.15 24.0
VIT_14s0030g00480.t01 Wine grape nucleus 29.86 23.0
PGSC0003DMT400016115 Potato nucleus 27.6 22.93
GSMUA_Achr9P21660_001 Banana nucleus 24.43 22.04
GSMUA_Achr1P17340_001 Banana nucleus 24.89 20.52
GSMUA_Achr8P34280_001 Banana nucleus 23.98 19.7
GSMUA_Achr10P... Banana nucleus 15.38 14.35
GSMUA_Achr2P00600_001 Banana nucleus 15.38 13.77
GSMUA_Achr5P05380_001 Banana nucleus 15.84 13.73
GSMUA_Achr8P00210_001 Banana mitochondrion, nucleus 5.88 12.15
GSMUA_Achr5P27460_001 Banana nucleus 4.52 10.64
Protein Annotations
EnsemblPlants:GSMUA_Achr8P00220_001EnsemblPlants:GSMUA_Achr8T00220_001EnsemblPlantsGene:GSMUA_Achr8G00220_001Gene3D:3.30.70.330GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0005488InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfInterPro:RBD_domain_sf
InterPro:RRM_domPANTHER:PTHR23147PANTHER:PTHR23147:SF7PFAM:PF00076PFscan:PS50102SEG:seg
SUPFAM:SSF54928UniParc:UPI0002951DDCUniProt:M0TLC4MapMan:35.1::
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G00220_001]
Coordinates
chr8:+:180605..185755
Molecular Weight (calculated)
25303.3 Da
IEP (calculated)
10.165
GRAVY (calculated)
-0.170
Length
221 amino acids
Sequence
(BLAST)
001: MVKMIFMHYG LTSYFPLLLH TLKFVRSFYF SYTMKEPRGF GFVKFRYAED AAVAKQHMNH QILGGREISI VYAEENRKTP QEMRMTTRIR NSDSTHIYAG
101: AVKDTWKEDT VGVLYPDLLD VNIAHIHVPP LHPDMNQGIM AGAVRIIITL HRDPSPRLHR MIGIIGRMIG GMMIGNTGPM MMKGITGRII NLQVLQEMAR
201: AHQGHDPTAL GERWRRHCSC I
Best Arabidopsis Sequence Match ( AT5G18810.2 )
(BLAST)
001: MARARSRSRS YSPRPRDRSP PRERKGYDDN RLRERPSSRD HESSGPSGLL IRNLPLDARP NDLRDSFERF GPLKDIYLPR NYYTGEPRGF GFVKYRYAED
101: AAEAMKRMNH KVIGGREIAI VFAEENRKTP QEMRTTNGTS GRHGDYKRTS HRSPRRRYRS HSRSRSPPRR ESRHSKVRED DLYSPRRRSR SISRSPLPRN
201: EREYKSRNCR SPREERVLTP IRSRCLSRSR SRSLR
Arabidopsis Description
SCL28Serine/arginine-rich SC35-like splicing factor SCL28 [Source:UniProtKB/Swiss-Prot;Acc:Q1PDV2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.