Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- mitochondrion 1
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr5P27470_001 | Banana | nucleus | 16.74 | 30.83 |
Solyc01g080660.2.1 | Tomato | nucleus | 22.17 | 29.52 |
Zm00001d029256_P002 | Maize | nucleus | 30.32 | 27.35 |
AT5G18810.1 | Thale cress | nucleus | 28.96 | 27.12 |
KXG39307 | Sorghum | nucleus | 29.41 | 26.97 |
KRH02172 | Soybean | nucleus | 30.32 | 26.8 |
KRH50944 | Soybean | nucleus | 29.41 | 26.75 |
Os03t0363800-01 | Rice | nucleus | 28.96 | 26.34 |
GSMUA_Achr4P13560_001 | Banana | nucleus | 24.43 | 24.88 |
TraesCS4D01G162900.1 | Wheat | nucleus | 26.7 | 24.79 |
HORVU4Hr1G045510.3 | Barley | nucleus | 26.24 | 24.27 |
TraesCS4B01G156200.1 | Wheat | nucleus | 26.24 | 24.27 |
TraesCS4A01G141800.2 | Wheat | nucleus | 27.15 | 24.0 |
VIT_14s0030g00480.t01 | Wine grape | nucleus | 29.86 | 23.0 |
PGSC0003DMT400016115 | Potato | nucleus | 27.6 | 22.93 |
GSMUA_Achr9P21660_001 | Banana | nucleus | 24.43 | 22.04 |
GSMUA_Achr1P17340_001 | Banana | nucleus | 24.89 | 20.52 |
GSMUA_Achr8P34280_001 | Banana | nucleus | 23.98 | 19.7 |
GSMUA_Achr10P... | Banana | nucleus | 15.38 | 14.35 |
GSMUA_Achr2P00600_001 | Banana | nucleus | 15.38 | 13.77 |
GSMUA_Achr5P05380_001 | Banana | nucleus | 15.84 | 13.73 |
GSMUA_Achr8P00210_001 | Banana | mitochondrion, nucleus | 5.88 | 12.15 |
GSMUA_Achr5P27460_001 | Banana | nucleus | 4.52 | 10.64 |
Protein Annotations
EnsemblPlants:GSMUA_Achr8P00220_001 | EnsemblPlants:GSMUA_Achr8T00220_001 | EnsemblPlantsGene:GSMUA_Achr8G00220_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
InterPro:RRM_dom | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF7 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
SUPFAM:SSF54928 | UniParc:UPI0002951DDC | UniProt:M0TLC4 | MapMan:35.1 | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G00220_001]
Coordinates
chr8:+:180605..185755
Molecular Weight (calculated)
25303.3 Da
IEP (calculated)
10.165
GRAVY (calculated)
-0.170
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKMIFMHYG LTSYFPLLLH TLKFVRSFYF SYTMKEPRGF GFVKFRYAED AAVAKQHMNH QILGGREISI VYAEENRKTP QEMRMTTRIR NSDSTHIYAG
101: AVKDTWKEDT VGVLYPDLLD VNIAHIHVPP LHPDMNQGIM AGAVRIIITL HRDPSPRLHR MIGIIGRMIG GMMIGNTGPM MMKGITGRII NLQVLQEMAR
201: AHQGHDPTAL GERWRRHCSC I
101: AVKDTWKEDT VGVLYPDLLD VNIAHIHVPP LHPDMNQGIM AGAVRIIITL HRDPSPRLHR MIGIIGRMIG GMMIGNTGPM MMKGITGRII NLQVLQEMAR
201: AHQGHDPTAL GERWRRHCSC I
001: MARARSRSRS YSPRPRDRSP PRERKGYDDN RLRERPSSRD HESSGPSGLL IRNLPLDARP NDLRDSFERF GPLKDIYLPR NYYTGEPRGF GFVKYRYAED
101: AAEAMKRMNH KVIGGREIAI VFAEENRKTP QEMRTTNGTS GRHGDYKRTS HRSPRRRYRS HSRSRSPPRR ESRHSKVRED DLYSPRRRSR SISRSPLPRN
201: EREYKSRNCR SPREERVLTP IRSRCLSRSR SRSLR
101: AAEAMKRMNH KVIGGREIAI VFAEENRKTP QEMRTTNGTS GRHGDYKRTS HRSPRRRYRS HSRSRSPPRR ESRHSKVRED DLYSPRRRSR SISRSPLPRN
201: EREYKSRNCR SPREERVLTP IRSRCLSRSR SRSLR
Arabidopsis Description
SCL28Serine/arginine-rich SC35-like splicing factor SCL28 [Source:UniProtKB/Swiss-Prot;Acc:Q1PDV2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.