Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G162900.1 | Wheat | nucleus | 93.6 | 98.32 |
| TraesCS4B01G156200.1 | Wheat | nucleus | 92.0 | 96.23 |
| HORVU4Hr1G045510.3 | Barley | nucleus | 89.2 | 93.31 |
| Os03t0363800-01 | Rice | nucleus | 74.0 | 76.13 |
| KXG39307 | Sorghum | nucleus | 68.8 | 71.37 |
| Zm00001d029256_P002 | Maize | nucleus | 68.4 | 69.8 |
| Solyc01g080660.2.1 | Tomato | nucleus | 39.2 | 59.04 |
| KRH50944 | Soybean | nucleus | 50.4 | 51.85 |
| KRH02172 | Soybean | nucleus | 51.6 | 51.6 |
| AT5G18810.1 | Thale cress | nucleus | 48.4 | 51.27 |
| VIT_14s0030g00480.t01 | Wine grape | nucleus | 56.4 | 49.13 |
| PGSC0003DMT400016115 | Potato | nucleus | 48.8 | 45.86 |
| TraesCS2A01G155100.1 | Wheat | nucleus | 34.8 | 42.44 |
| TraesCS4A01G289300.1 | Wheat | nucleus | 35.6 | 33.46 |
| TraesCS5A01G079000.1 | Wheat | nucleus | 36.0 | 30.41 |
| GSMUA_Achr8P00220_001 | Banana | extracellular | 24.0 | 27.15 |
| TraesCS2A01G162700.3 | Wheat | nucleus | 16.8 | 17.65 |
| TraesCS4A01G176000.13 | Wheat | nucleus | 28.8 | 7.91 |
Protein Annotations
| MapMan:16.4.6.2 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0016607 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF7 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS4A01G141800 | EnsemblPlants:TraesCS4A01G141800.2 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr4A:+:222559530..222564297
Molecular Weight (calculated)
29284.3 Da
IEP (calculated)
11.610
GRAVY (calculated)
-1.360
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGYRSRSRS YSPRRRYSRS PPRYRHYDDP RDRYRGGGGG PRRGYDRPSA PTGLLVRNIS LTARLEDIRG PFEQFGPIKD VYLPRNFHTK ELRGFGFVKF
101: RHPEDAAYAK QEMNHQVICG REITIVFAEE NRKTPQEMRF RTRSSGRHMD GNYRRRQSLS RSPRSRYPSY SPEPSPVRRH SRDRDNYSPR DSYSPHTRDK
201: RQHISDGRSP SLDGHERRIS PSNNGHGPPV DRRSPTLSLS PKVSFICRLR
101: RHPEDAAYAK QEMNHQVICG REITIVFAEE NRKTPQEMRF RTRSSGRHMD GNYRRRQSLS RSPRSRYPSY SPEPSPVRRH SRDRDNYSPR DSYSPHTRDK
201: RQHISDGRSP SLDGHERRIS PSNNGHGPPV DRRSPTLSLS PKVSFICRLR
001: MARARSRSRS YSPRPRDRSP PRERKGYDDN RLRERPSSRD HESSGPSGLL IRNLPLDARP NDLRDSFERF GPLKDIYLPR NYYTGEPRGF GFVKYRYAED
101: AAEAMKRMNH KVIGGREIAI VFAEENRKTP QEMRTTNGTS GRHGDYKRTS HRSPRRRYRS HSRSRSPPRR ESRHSKVRED DLYSPRRRSR SISRSPLPRN
201: EREYKSRNCR SPREERVLTP IRSRCLSRSR SRSLR
101: AAEAMKRMNH KVIGGREIAI VFAEENRKTP QEMRTTNGTS GRHGDYKRTS HRSPRRRYRS HSRSRSPPRR ESRHSKVRED DLYSPRRRSR SISRSPLPRN
201: EREYKSRNCR SPREERVLTP IRSRCLSRSR SRSLR
Arabidopsis Description
SCL28Serine/arginine-rich SC35-like splicing factor SCL28 [Source:UniProtKB/Swiss-Prot;Acc:Q1PDV2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.