Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P27460_001 | Banana | nucleus | 24.58 | 61.7 |
| Solyc01g080660.2.1 | Tomato | nucleus | 43.22 | 61.45 |
| KRH02172 | Soybean | nucleus | 64.83 | 61.2 |
| KRH50944 | Soybean | nucleus | 62.71 | 60.91 |
| GSMUA_Achr8P00210_001 | Banana | mitochondrion, nucleus | 26.69 | 58.88 |
| GSMUA_Achr5P27470_001 | Banana | nucleus | 28.39 | 55.83 |
| VIT_14s0030g00480.t01 | Wine grape | nucleus | 65.68 | 54.01 |
| KXG39307 | Sorghum | nucleus | 52.12 | 51.04 |
| TraesCS4B01G156200.1 | Wheat | nucleus | 50.85 | 50.21 |
| TraesCS4D01G162900.1 | Wheat | nucleus | 50.42 | 50.0 |
| HORVU4Hr1G045510.3 | Barley | nucleus | 50.0 | 49.37 |
| PGSC0003DMT400016115 | Potato | nucleus | 54.66 | 48.5 |
| TraesCS4A01G141800.2 | Wheat | nucleus | 51.27 | 48.4 |
| Os03t0363800-01 | Rice | nucleus | 49.58 | 48.15 |
| Zm00001d029256_P002 | Maize | nucleus | 49.58 | 47.76 |
| AT3G13570.1 | Thale cress | nucleus | 42.37 | 38.17 |
| AT3G55460.1 | Thale cress | mitochondrion, nucleus | 41.1 | 37.02 |
| AT1G55310.3 | Thale cress | nucleus | 44.92 | 35.45 |
| HORVU7Hr1G080760.3 | Barley | mitochondrion | 23.73 | 33.33 |
| HORVU1Hr1G043200.4 | Barley | mitochondrion, nucleus | 23.31 | 29.57 |
| GSMUA_Achr8P00220_001 | Banana | extracellular | 27.12 | 28.96 |
| AT5G64200.2 | Thale cress | nucleus | 28.81 | 22.44 |
Protein Annotations
| MapMan:16.4.6.2 | Gene3D:3.30.70.330 | EntrezGene:831999 | UniProt:A0A178UBM0 | EMBL:AC068655 | ProteinID:AED92615.1 |
| EMBL:AJ293797 | EMBL:AK118752 | ArrayExpress:AT5G18810 | EnsemblPlantsGene:AT5G18810 | RefSeq:AT5G18810 | TAIR:AT5G18810 |
| RefSeq:AT5G18810-TAIR-G | EnsemblPlants:AT5G18810.1 | TAIR:AT5G18810.1 | Unigene:At.10034 | EMBL:DQ446966 | EMBL:DQ653294 |
| GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005681 |
| GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 |
| GO:GO:0016607 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_197382.3 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:OAO90071.1 |
| PFAM:PF00076 | PO:PO:0000005 | PO:PO:0000293 | PFscan:PS50102 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF7 |
| UniProt:Q1PDV2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | Symbol:SCL28 | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI0000196DD3 | SEG:seg | : | : | : | : |
Description
SCL28Serine/arginine-rich SC35-like splicing factor SCL28 [Source:UniProtKB/Swiss-Prot;Acc:Q1PDV2]
Coordinates
chr5:-:6268644..6271325
Molecular Weight (calculated)
28029.9 Da
IEP (calculated)
11.945
GRAVY (calculated)
-1.574
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MARARSRSRS YSPRPRDRSP PRERKGYDDN RLRERPSSRD HESSGPSGLL IRNLPLDARP NDLRDSFERF GPLKDIYLPR NYYTGEPRGF GFVKYRYAED
101: AAEAMKRMNH KVIGGREIAI VFAEENRKTP QEMRTTNGTS GRHGDYKRTS HRSPRRRYRS HSRSRSPPRR ESRHSKVRED DLYSPRRRSR SISRSPLPRN
201: EREYKSRNCR SPREERVLTP IRSRCLSRSR SRSLSR
101: AAEAMKRMNH KVIGGREIAI VFAEENRKTP QEMRTTNGTS GRHGDYKRTS HRSPRRRYRS HSRSRSPPRR ESRHSKVRED DLYSPRRRSR SISRSPLPRN
201: EREYKSRNCR SPREERVLTP IRSRCLSRSR SRSLSR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.