Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G241800.1 | Wheat | nucleus | 87.94 | 90.77 |
| TraesCS4A01G064400.1 | Wheat | nucleus | 87.53 | 88.08 |
| TraesCS3D01G065600.1 | Wheat | cytosol | 47.4 | 68.26 |
| Zm00001d036620_P001 | Maize | nucleus | 61.12 | 65.77 |
| Os06t0670400-00 | Rice | cytosol | 60.5 | 62.05 |
| PGSC0003DMT400056014 | Potato | cytosol | 23.08 | 61.67 |
| EER88795 | Sorghum | cytosol | 70.89 | 61.0 |
| Os06t0670500-01 | Rice | cytosol | 71.1 | 60.64 |
| TraesCS7D01G457200.1 | Wheat | nucleus | 70.06 | 60.29 |
| PGSC0003DMT400011164 | Potato | cytosol | 22.45 | 58.38 |
| GSMUA_Achr10P... | Banana | cytosol | 63.2 | 54.87 |
| PGSC0003DMT400069100 | Potato | cytosol | 38.67 | 54.23 |
| PGSC0003DMT400011166 | Potato | nucleus | 32.64 | 53.77 |
| AT1G53720.1 | Thale cress | nucleus | 54.26 | 51.58 |
| Bra030819.1-P | Field mustard | cytosol | 54.68 | 48.35 |
| Solyc07g066420.2.1 | Tomato | nucleus | 56.76 | 46.51 |
| CDY72459 | Canola | cytosol, extracellular, plastid | 10.81 | 44.44 |
| KRH13056 | Soybean | nucleus | 58.21 | 44.23 |
| KRG93223 | Soybean | nucleus | 58.63 | 44.06 |
| VIT_19s0027g01660.t01 | Wine grape | nucleus | 58.42 | 44.04 |
| TraesCS7D01G060700.1 | Wheat | cytosol | 14.35 | 43.12 |
| TraesCS7D01G279100.1 | Wheat | cytosol | 13.51 | 39.63 |
| CDY10512 | Canola | nucleus | 55.09 | 26.71 |
| TraesCS3D01G211900.1 | Wheat | nucleus | 19.96 | 19.24 |
| TraesCS2D01G237600.1 | Wheat | mitochondrion | 7.9 | 16.31 |
| TraesCS4D01G259800.1 | Wheat | cytosol | 16.22 | 13.2 |
| TraesCS7D01G277600.1 | Wheat | nucleus | 13.72 | 10.19 |
Protein Annotations
| MapMan:18.12.1 | Gene3D:2.40.100.10 | Gene3D:3.30.70.330 | InterPro:CRIP | InterPro:Cyclophilin-like_dom_sf | InterPro:Cyclophilin-type_PPIase |
| InterPro:Cyclophilin-type_PPIase_dom | InterPro:Cyclophilin_PPIL4 | GO:GO:0000413 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003755 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0019538 | InterPro:IPR000504 | InterPro:IPR002130 | InterPro:IPR012677 | InterPro:IPR029000 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFAM:PF00160 | PRINTS:PR00153 | PFscan:PS50072 | PFscan:PS50102 | PANTHER:PTHR11071 |
| PANTHER:PTHR11071:SF156 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF50891 | SUPFAM:SSF54928 |
| EnsemblPlantsGene:TraesCS4D01G241400 | EnsemblPlants:TraesCS4D01G241400.1 | TIGR:cd01921 | TIGR:cd12235 | SEG:seg | : |
Description
No Description!
Coordinates
chr4D:-:403416418..403417863
Molecular Weight (calculated)
55210.1 Da
IEP (calculated)
6.513
GRAVY (calculated)
-0.931
Length
481 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVLIVTSVG DLVVDLHTDQ CPRTTYNFLK LCKMRYYNGC LFHKVAKDFV AQTGDPTGTG TGGDSMYKFL HGDQARFFDD EIHPELRHSK IGTVAMASAG
101: KNRNASQFYI TLRDDVEYLH DKHTVFGIVA EGEGLDTLTK INESYVDGEG RPFKDIRIKH TYVLYDPDDD PAQLAELVPP NSPIGKPIDE IAEERLEDTW
201: VPLDETVDPV QLEEMIRSKE AHTNAVILAS IGDIPDAKVK PPDNVLFVCQ LNPVTQDEDL YTIFSRTVTS AETICDYKTG DSLCYAFIEF EAKEACERAH
301: RDMQNCLIDA RRIHVDFSQS VSKLWRQFRQ GTRNANKDGC FKRHAPDYRA RDLDKGAEKK NKNRDYVLRD ENTQRGGSNR RSYDLVFDED GASADNRQDC
401: RNADRRKIQK LDDWRSEASH KRDRDRTNRD RNNREKLHIS EEGGRRHDGH ISYHGSSDRS YSRRNNSDYG KHQSKSRRRD D
101: KNRNASQFYI TLRDDVEYLH DKHTVFGIVA EGEGLDTLTK INESYVDGEG RPFKDIRIKH TYVLYDPDDD PAQLAELVPP NSPIGKPIDE IAEERLEDTW
201: VPLDETVDPV QLEEMIRSKE AHTNAVILAS IGDIPDAKVK PPDNVLFVCQ LNPVTQDEDL YTIFSRTVTS AETICDYKTG DSLCYAFIEF EAKEACERAH
301: RDMQNCLIDA RRIHVDFSQS VSKLWRQFRQ GTRNANKDGC FKRHAPDYRA RDLDKGAEKK NKNRDYVLRD ENTQRGGSNR RSYDLVFDED GASADNRQDC
401: RNADRRKIQK LDDWRSEASH KRDRDRTNRD RNNREKLHIS EEGGRRHDGH ISYHGSSDRS YSRRNNSDYG KHQSKSRRRD D
001: MSVLIVTSLG DIVIDLHSDK CPLTCKNFLK LCKIKYYNGC LFHTVQKDFT AQTGDPTGTG AGGDSIYKFL YGEQARFYKD EIHLDLKHSK TGTVAMASGG
101: ENLNASQFYF TLRDDLDYLD GKHTVFGQIA EGFDTLTRIN EAYVDPKNRP YKNIRIKHTH ILDDPFDDPP QLAEMMPDAS PEGKPKEEVK DDVRLEDDWV
201: PMDEELGAQE LEEVIREKAA HSSAVVLESI GDIPEAEVKP PDNVLFVCKL NPVTEDEDLH TIFSRFGTVV SADVIRDFKT GDSLCYAFIE FENKESCEQA
301: YFKMDNALID DRRIHVDFSQ SVSKLWSQFR QKDSQKGKGN GCFKCGSTDH IAKDCVGGPS SKFIVKDQNR QHGGGEGYEM VFEGDVHETP KHNSHERERS
401: EKIQRRSPHG NGEGKRQHRD ERDDGRRQHD REDARELERK HRERKERESR EDEDRRRRRR REESRDKESR RERDEDDHRS HRDYKERRRE RDDRHGREAR
501: HERRDR
101: ENLNASQFYF TLRDDLDYLD GKHTVFGQIA EGFDTLTRIN EAYVDPKNRP YKNIRIKHTH ILDDPFDDPP QLAEMMPDAS PEGKPKEEVK DDVRLEDDWV
201: PMDEELGAQE LEEVIREKAA HSSAVVLESI GDIPEAEVKP PDNVLFVCKL NPVTEDEDLH TIFSRFGTVV SADVIRDFKT GDSLCYAFIE FENKESCEQA
301: YFKMDNALID DRRIHVDFSQ SVSKLWSQFR QKDSQKGKGN GCFKCGSTDH IAKDCVGGPS SKFIVKDQNR QHGGGEGYEM VFEGDVHETP KHNSHERERS
401: EKIQRRSPHG NGEGKRQHRD ERDDGRRQHD REDARELERK HRERKERESR EDEDRRRRRR REESRDKESR RERDEDDHRS HRDYKERRRE RDDRHGREAR
501: HERRDR
Arabidopsis Description
CYP59Peptidyl-prolyl cis-trans isomerase CYP59 [Source:UniProtKB/Swiss-Prot;Acc:Q6Q151]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.