Factsheet for TraesCS2D01G237600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
golgi 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G255000.1	Wheat	mitochondrion	96.57	96.57
Os07t0476500-01	Rice	mitochondrion	81.55	80.85
Zm00001d021332_P002	Maize	mitochondrion	76.39	76.39
KXG36207	Sorghum	mitochondrion	76.39	76.39
HORVU2Hr1G054470.1	Barley	plastid	77.25	70.59
GSMUA_Achr10P...	Banana	endoplasmic reticulum	58.37	58.12
GSMUA_Achr5P15930_001	Banana	mitochondrion	57.08	56.84
CDY05284	Canola	endoplasmic reticulum, mitochondrion, plastid	53.65	53.42
KRH34786	Soybean	endoplasmic reticulum	52.36	52.59
CDY24675	Canola	endoplasmic reticulum, mitochondrion, plastid	52.79	52.56
KRH49483	Soybean	mitochondrion	49.79	51.56
Bra029595.1-P	Field mustard	mitochondrion, plastid	51.93	51.27
KRG89165	Soybean	endoplasmic reticulum	50.21	50.87
AT3G66654.3	Thale cress	plastid	51.07	50.42
PGSC0003DMT400009946	Potato	mitochondrion	49.79	49.15
Solyc09g008410.2.1	Tomato	plastid	49.36	48.73
PGSC0003DMT400072698	Potato	mitochondrion, plastid	47.21	47.83
Solyc10g083930.1.1	Tomato	nucleus	46.78	47.39
VIT_05s0077g01040.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	57.08	47.0
KRG91995	Soybean	endoplasmic reticulum, mitochondrion, plastid	52.79	42.12
TraesCS7D01G060700.1	Wheat	cytosol	19.31	28.12
TraesCS7D01G279100.1	Wheat	cytosol	18.03	25.61
TraesCS7D01G277600.1	Wheat	nucleus	26.18	9.41
TraesCS4D01G259800.1	Wheat	cytosol	21.46	8.46
TraesCS3D01G211900.1	Wheat	nucleus	17.6	8.22
TraesCS3D01G065600.1	Wheat	cytosol	11.59	8.08
TraesCS4D01G241400.1	Wheat	nucleus	16.31	7.9
TraesCS7D01G457200.1	Wheat	nucleus	17.17	7.16

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802	GO:GO:0005886	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0019538	InterPro:IPR002130
InterPro:IPR029000	PFAM:PF00160	PIRSF:PIRSF001467	PRINTS:PR00153	PFscan:PS50072	PANTHER:PTHR11071
PANTHER:PTHR11071:SF200	SUPFAM:SSF50891	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS2D01G237600	EnsemblPlants:TraesCS2D01G237600.1	TIGR:cd00317

Description

No Description!

Coordinates

chr2D:+:242326350..242332366

Molecular Weight (calculated)

26175.6 Da

IEP (calculated)

7.822

GRAVY (calculated)

-0.192

Length

233 amino acids

Sequence
(BLAST)

001: MARLKPKQLL IQSKTKKGPS RISYSSIITW KLIVVLVVLS LYATYRHWHH RPAFEAEMDL PRAENVERSE DSTKISTPSY VIMDTLKGSI TIEISKDASA
101: GVVDRFINLC KSDYFKGMPF RHVIKNSVIH GGDFDLNGAA HEWILKAKAS GENALSPKHE AFMIGTTRSP NSKGFDLFIT TAPIPDLNDK IVLFGRVIKG
201: EDIVQEIEEI DTDEHYQPKT PIGIINISLI QEL

Best Arabidopsis Sequence Match ( AT3G66654.4 )
(BLAST)

001: MAKIKPQALL NQSKKKKGPS RISISTIIVC NLVVAVVILS LVTTYRHWSQ RSRNTIEHET RSQRFEDTNT ASGQKTYDLP GFADINTSKG LITVELFKEG
101: SPEVVDKFLD LCQKDHFKGM PFQRVIKNYL VQAGHSPSSI PVEEWTAKGK LRGRLHIGPK HEAFMLGTPK NKGNNKDFEL LITTAPIPDL NDQLIVFGRV
201: LKGEDVVQEI EEVDTDEHFQ PKSPIGITGV VLKLET

Arabidopsis Description

CYP21-4Peptidyl-prolyl cis-trans isomerase CYP21-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C835]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.