CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
mitochondrion 5
endoplasmic reticulum 1
cytosol 1
golgi 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49483	Soybean	mitochondrion	78.45	80.89
KRG89165	Soybean	endoplasmic reticulum	79.74	80.43
KRG91995	Soybean	endoplasmic reticulum, mitochondrion, plastid	97.41	77.4
Solyc09g008410.2.1	Tomato	plastid	64.22	63.14
PGSC0003DMT400009946	Potato	mitochondrion	63.36	62.29
Solyc10g083930.1.1	Tomato	nucleus	60.34	60.87
PGSC0003DMT400072698	Potato	mitochondrion, plastid	59.91	60.43
CDY24675	Canola	endoplasmic reticulum, mitochondrion, plastid	58.19	57.69
GSMUA_Achr10P...	Banana	endoplasmic reticulum	58.19	57.69
GSMUA_Achr5P15930_001	Banana	mitochondrion	57.76	57.27
CDY05284	Canola	endoplasmic reticulum, mitochondrion, plastid	57.76	57.27
AT3G66654.3	Thale cress	plastid	58.19	57.2
Zm00001d021332_P002	Maize	mitochondrion	56.03	55.79
KXG36207	Sorghum	mitochondrion	56.03	55.79
Os07t0476500-01	Rice	mitochondrion	56.47	55.74
VIT_05s0077g01040.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	67.67	55.48
Bra029595.1-P	Field mustard	mitochondrion, plastid	55.6	54.66
TraesCS2B01G255000.1	Wheat	mitochondrion	53.88	53.65
TraesCS2D01G237600.1	Wheat	mitochondrion	52.59	52.36
HORVU2Hr1G054470.1	Barley	plastid	43.53	39.61
KRH76297	Soybean	cytosol	21.12	29.7
KRH67956	Soybean	endoplasmic reticulum, nucleus	19.83	28.05
KRG96215	Soybean	nucleus	20.26	21.27
KRH26593	Soybean	nucleus	31.9	12.01
KRH22711	Soybean	nucleus	31.03	11.69
KRH28354	Soybean	nucleus	26.29	10.22
KRH77127	Soybean	nucleus	25.43	9.88
KRH05304	Soybean	nucleus	18.1	8.52
KRG93223	Soybean	nucleus	16.38	5.94
KRH13056	Soybean	nucleus	15.95	5.85

Protein Annotations

EntrezGene:100803596	MapMan:18.12.1	Gene3D:2.40.100.10	EMBL:ACUP02006630	EMBL:BT093358	UniProt:C6T7D2
InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_dom	EnsemblPlantsGene:GLYMA_10G206100	GO:GO:0000413	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130
InterPro:IPR029000	EnsemblPlants:KRH34786	ProteinID:KRH34786	ProteinID:KRH34786.1	PFAM:PF00160	PIRSF:PIRSF001467
PRINTS:PR00153	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF200	SUPFAM:SSF50891	TMHMM:TMhelix
UniParc:UPI0001B16572	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:43763030..43770594

Molecular Weight (calculated)

26175.6 Da

IEP (calculated)

8.906

GRAVY (calculated)

-0.289

Length

232 amino acids

Sequence
(BLAST)

001: MARIKPQALL QQSKRKKGPS RISAATVIFY FLILALLGFF LFASYRHWSS RSRLQSEDHL SVSEGENTFV DSKKSELPGY AVLNTSKGSI IIELYKESAP
101: EVVDEFIDLC QKGHFKGMLF HKVIKHYVIQ AGDNQGQGAT EDWNLRGKQH TITSMKHEAF MLGTSKGKHH NKGFDLFITT APIPDLNEKI IVFGQVIKGE
201: DVVQEIEEVD TDEHYKPKVS IGILDVTLKQ KV

Best Arabidopsis Sequence Match ( AT3G66654.4 )
(BLAST)

001: MAKIKPQALL NQSKKKKGPS RISISTIIVC NLVVAVVILS LVTTYRHWSQ RSRNTIEHET RSQRFEDTNT ASGQKTYDLP GFADINTSKG LITVELFKEG
101: SPEVVDKFLD LCQKDHFKGM PFQRVIKNYL VQAGHSPSSI PVEEWTAKGK LRGRLHIGPK HEAFMLGTPK NKGNNKDFEL LITTAPIPDL NDQLIVFGRV
201: LKGEDVVQEI EEVDTDEHFQ PKSPIGITGV VLKLET

Arabidopsis Description

CYP21-4Peptidyl-prolyl cis-trans isomerase CYP21-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C835]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.