Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
endoplasmic reticulum: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0007g02900.t01 | Wine grape | cytosol | 93.9 | 92.77 |
| GSMUA_Achr8P32900_001 | Banana | cytosol | 90.24 | 90.24 |
| EES14084 | Sorghum | cytosol | 89.02 | 89.02 |
| Solyc09g010190.2.1 | Tomato | nucleus | 89.02 | 89.02 |
| PGSC0003DMT400022853 | Potato | cytosol | 89.02 | 89.02 |
| Bra005297.1-P | Field mustard | cytosol | 88.41 | 88.41 |
| CDX75068 | Canola | cytosol | 88.41 | 88.41 |
| CDX84155 | Canola | cytosol | 88.41 | 88.41 |
| Os08t0559400-01 | Rice | cytosol, nucleus | 88.41 | 88.41 |
| AT2G36130.1 | Thale cress | cytosol | 87.8 | 87.8 |
| TraesCS7D01G279100.1 | Wheat | cytosol | 87.2 | 87.2 |
| TraesCS7B01G180900.1 | Wheat | cytosol | 87.2 | 87.2 |
| TraesCS7A01G279300.1 | Wheat | cytosol, nucleus | 85.37 | 85.37 |
| Zm00001d031937_P001 | Maize | cytosol | 78.05 | 73.56 |
| KRG96215 | Soybean | nucleus | 97.56 | 72.4 |
| HORVU7Hr1G059320.3 | Barley | plastid | 87.2 | 71.14 |
| KRH76297 | Soybean | cytosol | 46.34 | 46.06 |
| KRG89165 | Soybean | endoplasmic reticulum | 28.66 | 20.43 |
| KRH34786 | Soybean | endoplasmic reticulum | 28.05 | 19.83 |
| KRH49483 | Soybean | mitochondrion | 26.83 | 19.56 |
| KRH05304 | Soybean | nucleus | 53.05 | 17.65 |
| KRG91995 | Soybean | endoplasmic reticulum, mitochondrion, plastid | 28.66 | 16.1 |
| KRH22711 | Soybean | nucleus | 49.39 | 13.15 |
| KRH26593 | Soybean | nucleus | 48.78 | 12.99 |
| KRH28354 | Soybean | nucleus | 46.95 | 12.9 |
| KRH77127 | Soybean | nucleus | 45.73 | 12.56 |
| KRH13056 | Soybean | nucleus | 42.68 | 11.06 |
| KRG93223 | Soybean | nucleus | 42.68 | 10.94 |
Protein Annotations
| MapMan:18.12.1 | Gene3D:2.40.100.10 | UniProt:A0A0R4J2Z8 | EMBL:ACUP02002094 | InterPro:Cyclophilin-like_dom_sf | InterPro:Cyclophilin-type_PPIase |
| InterPro:Cyclophilin-type_PPIase_CS | InterPro:Cyclophilin-type_PPIase_dom | EnsemblPlantsGene:GLYMA_03G198200 | GO:GO:0000413 | GO:GO:0003674 | GO:GO:0003755 |
| GO:GO:0003824 | GO:GO:0006457 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016853 | GO:GO:0019538 | InterPro:IPR002130 | InterPro:IPR029000 | EnsemblPlants:KRH67956 | ProteinID:KRH67956 |
| ProteinID:KRH67956.1 | PFAM:PF00160 | PIRSF:PIRSF001467 | PRINTS:PR00153 | ScanProsite:PS00170 | PFscan:PS50072 |
| PANTHER:PTHR11071 | PANTHER:PTHR11071:SF213 | SUPFAM:SSF50891 | UniParc:UPI0001890A6A | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr3:-:40759565..40762305
Molecular Weight (calculated)
18154.7 Da
IEP (calculated)
8.825
GRAVY (calculated)
-0.446
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MWASAEGGAP EVTLETSMGS FTVELYYKHA PRTCRNFIEL SRRGYYDNVK FHRIIKDFIV QGGDPTGTGR GGESIYGAKF EDEIKRELKH TGAGILSMAN
101: AGPNTNGSQF FITLAPCPSL DGKHTIFGRV CRGMEIIKRL GSVQTDNNDR PIHDVKILRT SVKD
101: AGPNTNGSQF FITLAPCPSL DGKHTIFGRV CRGMEIIKRL GSVQTDNNDR PIHDVKILRT SVKD
001: MSARPEGSPP EVTLETSMGP FTVEMYYKHS PRTCRNFLEL SRRGYYDNVL FHRIVKDFIV QGGDPTGTGR GGESIYGSKF EDEINKELKH TGAGILSMAN
101: AGPNTNGSQF FITLAPQPSL DGKHTIFGRV CRGMEVIKRL GSVQTDNTDR PIHEVKILRT KVID
101: AGPNTNGSQF FITLAPQPSL DGKHTIFGRV CRGMEVIKRL GSVQTDNTDR PIHEVKILRT KVID
Arabidopsis Description
CYP18-2Peptidyl-prolyl cis-trans isomerase CYP18-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.