CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, plastid

Predictor Summary:

plastid 3
mitochondrion 2
endoplasmic reticulum 2
cytosol 1
extracellular 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34786	Soybean	endoplasmic reticulum	77.4	97.41
KRH49483	Soybean	mitochondrion	61.64	80.0
KRG89165	Soybean	endoplasmic reticulum	62.67	79.57
Solyc09g008410.2.1	Tomato	plastid	50.34	62.29
PGSC0003DMT400009946	Potato	mitochondrion	49.66	61.44
Solyc10g083930.1.1	Tomato	nucleus	47.6	60.43
PGSC0003DMT400072698	Potato	mitochondrion, plastid	46.92	59.57
CDY24675	Canola	endoplasmic reticulum, mitochondrion, plastid	46.58	58.12
CDY05284	Canola	endoplasmic reticulum, mitochondrion, plastid	46.23	57.69
AT3G66654.3	Thale cress	plastid	46.58	57.63
GSMUA_Achr10P...	Banana	endoplasmic reticulum	45.55	56.84
GSMUA_Achr5P15930_001	Banana	mitochondrion	45.55	56.84
Zm00001d021332_P002	Maize	mitochondrion	44.52	55.79
Os07t0476500-01	Rice	mitochondrion	44.86	55.74
KXG36207	Sorghum	mitochondrion	44.18	55.36
VIT_05s0077g01040.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	53.42	55.12
Bra029595.1-P	Field mustard	mitochondrion, plastid	44.52	55.08
TraesCS2B01G255000.1	Wheat	mitochondrion	42.81	53.65
TraesCS2D01G237600.1	Wheat	mitochondrion	42.12	52.79
HORVU2Hr1G054470.1	Barley	plastid	34.93	40.0
KRH76297	Soybean	cytosol	17.12	30.3
KRH67956	Soybean	endoplasmic reticulum, nucleus	16.1	28.66
KRG96215	Soybean	nucleus	16.44	21.72
KRH26593	Soybean	nucleus	26.37	12.5
KRH22711	Soybean	nucleus	25.68	12.18
KRH28354	Soybean	nucleus	21.23	10.39
KRH77127	Soybean	nucleus	20.55	10.05
KRH05304	Soybean	nucleus	14.73	8.72
KRG93223	Soybean	nucleus	13.36	6.09
KRH13056	Soybean	nucleus	13.01	6.0

Protein Annotations

EntrezGene:100781538	MapMan:18.12.1	Gene3D:2.40.100.10	EMBL:ACUP02012722	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase
InterPro:Cyclophilin-type_PPIase_dom	EnsemblPlantsGene:GLYMA_20G184400	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824
GO:GO:0005575	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016853	GO:GO:0019538	UniProt:I1NHJ6	InterPro:IPR002130	InterPro:IPR029000
EnsemblPlants:KRG91995	ProteinID:KRG91995	ProteinID:KRG91995.1	PFAM:PF00160	PRINTS:PR00153	PFscan:PS50072
PANTHER:PTHR11071	PANTHER:PTHR11071:SF200	SUPFAM:SSF50891	TMHMM:TMhelix	UniParc:UPI00023DBD79	:

Description

hypothetical protein

Coordinates

chr20:-:42255658..42260945

Molecular Weight (calculated)

33173.9 Da

IEP (calculated)

8.619

GRAVY (calculated)

-0.228

Length

292 amino acids

Sequence
(BLAST)

001: MTRQHWKTPV GILYRTTYFS PIIIEFESKK PPTHTFVDSC SVPFLNPTQH RVLFFSSIHY VPDPLLQALL QQSKRKKGPS RISAVTVIFY FLILALVGFF
101: LFASYRHWSS RSRLQSEDHL SVSEGENTFV DSKKSELPGY AVLNTSKGSI IIELYKESAP EVVDEFIDLC QKGHFKGMLF HKVIKHYVIQ AGDNQGSGAT
201: EDWNLRGKQH TITSMKHEAF MLGTSKGKHN NKGFDLFITT APIPDLNEKI IVFGQVIKGE DVVQEIEEVD TDEHYKPKVS IGILDVTLKQ KV

Best Arabidopsis Sequence Match ( AT3G66654.1 )
(BLAST)

001: MAKIKPQALL NQSKKKKGPS RISISTIIVC NLVVAVVILS LVTTYRHWSQ RSRNTIEHET RSQRFEDTNT ASGQKTYDLP GFADINTSKG LITVELFKEG
101: SPEVVDKFLD LCQKDHFKGM PFQRVIKNYL VQAGHSPSSI PVEEWTAKGK LRGRLHIGPK HEAFMLGTPK NKGNNKDFEL LITTAPIPDL NDQLIVFGRV
201: LKGEDVVQEI EEVDTDEHFQ PKSPIGITGV VLKLET

Arabidopsis Description

CYP21-4Peptidyl-prolyl cis-trans isomerase CYP21-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C835]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.