CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH06008
KRH17522
KRH51611
KRH52586
KRH60933
KRH61926

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G67530.1	KRH06008	AT1G20630.1	21798944
AT5G67530.1	KRH17522	AT1G20630.1	21798944
AT5G67530.1	KRH51611	AT1G20630.1	21798944
AT5G67530.1	KRH60933	AT1G20630.1	21798944
AT5G67530.1	KRH52586	AT1G22920.1	21798944
AT5G67530.1	KRH61926	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77127	Soybean	nucleus	96.98	96.98
VIT_07s0129g00040.t01	Wine grape	cytosol	83.25	83.25
VIT_00s0513g00020.t01	Wine grape	cytosol	45.56	82.18
Solyc02g092380.2.1	Tomato	nucleus	81.24	81.38
GSMUA_Achr1P22460_001	Banana	cytosol	80.9	81.18
PGSC0003DMT400055240	Potato	cytosol	80.9	81.04
EER92686	Sorghum	cytosol	78.39	79.19
TraesCS4B01G260100.1	Wheat	cytosol	76.55	77.46
TraesCS4D01G259800.1	Wheat	cytosol	76.55	77.33
HORVU4Hr1G070330.9	Barley	cytosol	76.21	77.12
TraesCS4A01G045200.1	Wheat	cytosol	76.21	77.12
AT5G67530.1	Thale cress	cytosol	76.38	76.64
CDY36499	Canola	cytosol	76.55	76.55
Os03t0201100-01	Rice	cytosol	19.1	76.51
CDY08725	Canola	cytosol	76.05	76.05
Bra024442.1-P	Field mustard	cytosol	75.88	75.88
Zm00001d028109_P006	Maize	cytosol	78.06	70.08
KRH76297	Soybean	cytosol	15.08	54.55
KRH67956	Soybean	endoplasmic reticulum, nucleus	12.9	46.95
KRG96215	Soybean	nucleus	13.23	35.75
KRH34786	Soybean	endoplasmic reticulum	10.22	26.29
KRG89165	Soybean	endoplasmic reticulum	9.38	24.35
KRH49483	Soybean	mitochondrion	8.71	23.11
KRH22711	Soybean	nucleus	22.45	21.75
KRH26593	Soybean	nucleus	22.28	21.59
KRG91995	Soybean	endoplasmic reticulum, mitochondrion, plastid	10.39	21.23
KRH05304	Soybean	nucleus	16.42	19.88
KRG93223	Soybean	nucleus	13.07	12.19
KRH13056	Soybean	nucleus	12.9	12.16

Protein Annotations

EntrezGene:100785814	MapMan:18.12.1	Gene3D:2.40.100.10	Gene3D:3.30.40.10	EMBL:ACUP02006746	InterPro:Cyclophilin-like_dom_sf
InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	EnsemblPlantsGene:GLYMA_11G047800	GO:GO:0000209	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0016853	GO:GO:0019538	GO:GO:0034450
UniProt:I1LH60	InterPro:IPR002130	InterPro:IPR003613	InterPro:IPR013083	InterPro:IPR029000	EnsemblPlants:KRH28354
ProteinID:KRH28354	ProteinID:KRH28354.1	PFAM:PF00160	PFAM:PF04564	PRINTS:PR00153	ScanProsite:PS00170
PFscan:PS50072	PFscan:PS51698	PANTHER:PTHR11071	PANTHER:PTHR11071:SF147	SMART:SM00504	SUPFAM:SSF50891
SUPFAM:SSF57850	UniParc:UPI000233D43C	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

hypothetical protein

Coordinates

chr11:-:3568992..3574381

Molecular Weight (calculated)

65375.0 Da

IEP (calculated)

8.043

GRAVY (calculated)

-0.547

Length

597 amino acids

Sequence
(BLAST)

001: MGKKQHSKDR MFITKTEWAT EWGGAKSKEN RTPFKRLPFY CCSLTFTPFE EPVCTPDGSV FDNMNITPYI VKYGKHPVTG APLKHQDLIS LTFHKNSEGE
101: YHCPVLNKVF TEFTHIVAVK TTGNVFCYEA VKELNIKTKN WKELLTDEPF TKDDLITIQN PNALDSKVLL DFDHVKNSLK VDDEELQKMS SDPTYNINMS
201: GDIKQMLKEL GTEKGKETAL HGGGGGKAQK ERAAALAAIL AARSRVEEDS KSNPNKEVKV SQAFSIVDAA SASVHGRSAA AAKASADDKT AARIAMHMAG
301: DRAPVNAKMV KSRFTTGAAS RSFTSTSFDP VTKNEFEYVK VEKNPKKKGY VQLHTTHGDL NIELHCDIAP RACENFITLC ERGYYNGVAF HRNIRNFMIQ
401: GGDPTGTGRG GESIWGKPFK DELNSKLVHS GRGVVSMANS GPHTNGSQFF ILYKSANHLN FKHTVFGGVV GGLTTLSVME KVPVDDDDRP LEEIKILSVT
501: IFVNPYTEPD EGEEQDNAKE KNAEDEDNGK VGSWYSNPGA ATSESGGTGV GGGVGKYLKA RNAQAKSATV DNTGTDVVVK KRKVGVASSE FKDFSAW

Best Arabidopsis Sequence Match ( AT5G67530.1 )
(BLAST)

001: MGKKQHSKDR MFITKTEWAT EWGGAKSKEN RTPFKSLPYY CCALTFLPFE DPVCTIDGSV FEITTIVPYI RKFGKHPVTG APLKGEDLIP LIFHKNSEGE
101: YHCPVLNKVF TEFTHIVAVK TTGNVFCYEA IKELNIKTKN WKELLTEEPF TRADLITIQN PNAVDGKVTV EFDHVKNGLK IDDEELKKMN SDPAYNINVS
201: GDIKHMLADL GTDKAKEIAL HGGGGNKARN ERAAAIAAIL ESRSKIKEVS KAEQPKQTYS VVDAASASVF GRSADAAKAG SSDKTAARIA MHMAGDRTPV
301: NSKMVKSRYS SGAASRSFTS SAFTPVTKND FELIKVEKNP KKKGYVQFQT THGDLNIELH CDIAPRACEN FITLCERGYY NGVAFHRSIR NFMIQGGDPT
401: GTGKGGESIW GKPFKDEPNS KLLHSGRGVV SMANSGPHTN GSQFFVLYKS ATHLNYKHTV FGGVVGGLAT LAAMENVPVD ESDRPLEEIK IIEASVFVNP
501: YTELDEEEEK EKAEKEKNED KDIEKIGSWY SNPGSGTTEA GAGGGGVGKY LKAMSSTATK DTKGSLDSDI STIGVSKKRK TTASASTGFK DFSSW

Arabidopsis Description

CYP65Peptidyl-prolyl cis-trans isomerase CYP65 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJX0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.