CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22711	Soybean	nucleus	97.24	97.24
PGSC0003DMT400019171	Potato	cytosol	87.66	86.96
Solyc11g067090.1.1	Tomato	cytosol, nucleus	87.5	86.66
GSMUA_Achr1P17040_001	Banana	cytosol	86.85	85.46
Bra019430.1-P	Field mustard	cytosol	85.39	84.57
CDX99192	Canola	cytosol	85.39	84.57
CDY08708	Canola	cytosol	85.23	84.41
VIT_06s0061g01590.t01	Wine grape	cytosol	81.17	84.18
AT3G44600.1	Thale cress	cytosol	85.23	83.2
OQU80719	Sorghum	cytosol	83.6	79.6
TraesCS7A01G277700.1	Wheat	cytosol	83.6	79.48
TraesCS7D01G277600.1	Wheat	nucleus	83.44	79.32
TraesCS7B01G175400.1	Wheat	cytosol	83.28	79.17
Zm00001d049958_P002	Maize	cytosol	82.95	76.16
HORVU7Hr1G058730.3	Barley	cytosol, mitochondrion, nucleus	83.12	75.63
KRH67956	Soybean	endoplasmic reticulum, nucleus	12.99	48.78
KRH76297	Soybean	cytosol	12.5	46.67
KRG96215	Soybean	nucleus	13.15	36.65
KRH34786	Soybean	endoplasmic reticulum	12.01	31.9
KRG89165	Soybean	endoplasmic reticulum	11.69	31.3
KRH49483	Soybean	mitochondrion	11.2	30.67
KRG91995	Soybean	endoplasmic reticulum, mitochondrion, plastid	12.5	26.37
KRH28354	Soybean	nucleus	21.59	22.28
KRH77127	Soybean	nucleus	21.27	21.94
KRH05304	Soybean	nucleus	12.66	15.82
KRH13056	Soybean	nucleus	10.39	10.11
KRG93223	Soybean	nucleus	10.39	10.0

Protein Annotations

EntrezGene:100801887	MapMan:18.12.1	Gene3D:2.130.10.10	Gene3D:2.40.100.10	EMBL:ACUP02007724	InterPro:Cyclophilin-like_dom_sf
InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	EnsemblPlantsGene:GLYMA_12G182700	GO:GO:0000413	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006457	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	UniProt:I1LTT0
InterPro:IPR001680	InterPro:IPR002130	InterPro:IPR015943	InterPro:IPR017986	InterPro:IPR029000	EnsemblPlants:KRH26593
ProteinID:KRH26593	ProteinID:KRH26593.1	PFAM:PF00160	PFAM:PF00400	PRINTS:PR00153	ScanProsite:PS00170
PFscan:PS50072	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR11071	PANTHER:PTHR11071:SF213	SMART:SM00320
SUPFAM:SSF50891	SUPFAM:SSF50978	UniParc:UPI000233D5DF	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:34377747..34383622

Molecular Weight (calculated)

69329.8 Da

IEP (calculated)

7.312

GRAVY (calculated)

-0.381

Length

616 amino acids

Sequence
(BLAST)

001: MTEEHENGAN ASEEEQVIGP GPAPRARPKR PLQFEHAYLD ALPSANMYEK SYMHRDVVTH VAVSAAEFFI TGSADGHLKF WKKRPIGIEF AKHFRSHLGP
101: IEGLAVSIDG LLCCTISNDR SVKIYDVVNF DMMVMIRLPY VPGAVEWVYK QGDVKARLAI SDRNSSFVHI YDARAGTNDP IISKEIHMGP IKVMKYNPVC
201: DSVLSADAKG IIEYWSPATL QFPENVVDFK LKSDTNLFEI AKCKTSVSAI EVSPDGKQFS ITSPDRRIRV FWFSTGKLRR VYDESLEVAQ DLQRSDAPLY
301: RLEAIDFGRR MAVEKEIEKT ESALLPNAVF DESSNFLIYA TLLGIKIVNL HTNKVARILG KVENNDRFLR IALYQGDRNS KKVRKIPSAA ANANESKEPL
401: TDPTLLCCAF KKHRIYLFSR REPEEPEDAT KGRDVFNEKP PADELLAVSD IGKSVTTSLP DNVILHTTMG DIHMKLYPEE CPKTVENFTT HCRNGYYDNL
501: IFHRVIKGFM IQTGDPLGDG TGGQSIWGRE FEDEFHKSLR HDRPFTVSMA NAGQNTNGSQ FFITTVATPW LDNKHTVFGR VAKGMDVVQA IEKVKTDRTD
601: KPHQDVKILN VTVPKS

Best Arabidopsis Sequence Match ( AT3G44600.1 )
(BLAST)

001: MEEESKNGGT TIPTEELAVV AVPPVVEEEE PMVGPGPAPR GKRKRPLQFE QAYLDSLPSA NMYEKSYMHR DVVTHVAVSA AEFFISGSMD GHLKFWKKKG
101: VGIEFAKHFR SHLGPIEGLA VSIDGLLCCT ISNDHAVKIY DVVNYDMMAM IRLPYIPGAV EWVYKQGDVK AKLAVSDRDS LFVHIYDPRS GSNEPIASKE
201: IHMNPIKVMK YNPVSDTMIS GDTKGIIEYW SATTLQFPED EVNFKLKSDT NLFEIIKCKT TISAIEVSPD GKQFSITAPD RRIRVFWFRT GKLRRVYDES
301: LVVAQDLQRS DAPLYRLEAI DFGRRMAVEK ELEKTESAPQ PNAVFDESSN FLIYATFLGI KVINLHTNTV ARILGKVESN ERYLRVALYQ GDQGGKKVRK
401: IPAAAANVNE SKEPLTDPTI LCCAFKKHRI YMFSRREPEE PEDASQGRDV FNEKPAADEL MSVSDIGNSA TTSLPENVIM HTTLGDIHMK LYPEECPKTV
501: ENFTTHCRNG YYDNHLFHRV IRGFMIQTGD PLGDGTGGQS IWGREFEDEF HKSLRHDRPF TLSMANAGPN TNGSQFFITT VATPWLDNKH TVFGRVVKGM
601: DVVQGIEKVK TDKNDRPYQD VKILNVTVPK S

Arabidopsis Description

CYP71Peptidyl-prolyl cis-trans isomerase CYP71 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4D0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.