CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
mitochondrion 5
endoplasmic reticulum 1
cytosol 1
golgi 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49483	Soybean	mitochondrion	91.74	93.78
KRH34786	Soybean	endoplasmic reticulum	80.43	79.74
KRG91995	Soybean	endoplasmic reticulum, mitochondrion, plastid	79.57	62.67
Solyc09g008410.2.1	Tomato	plastid	61.3	59.75
PGSC0003DMT400009946	Potato	mitochondrion	59.57	58.05
CDY05284	Canola	endoplasmic reticulum, mitochondrion, plastid	58.7	57.69
CDY24675	Canola	endoplasmic reticulum, mitochondrion, plastid	58.7	57.69
Solyc10g083930.1.1	Tomato	nucleus	56.96	56.96
PGSC0003DMT400072698	Potato	mitochondrion, plastid	56.96	56.96
AT3G66654.3	Thale cress	plastid	58.26	56.78
Bra029595.1-P	Field mustard	mitochondrion, plastid	56.96	55.51
GSMUA_Achr5P15930_001	Banana	mitochondrion	55.65	54.7
GSMUA_Achr10P...	Banana	endoplasmic reticulum	55.22	54.27
VIT_05s0077g01040.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	65.65	53.36
Os07t0476500-01	Rice	mitochondrion	54.35	53.19
KXG36207	Sorghum	mitochondrion	53.48	52.79
Zm00001d021332_P002	Maize	mitochondrion	53.48	52.79
TraesCS2B01G255000.1	Wheat	mitochondrion	52.17	51.5
TraesCS2D01G237600.1	Wheat	mitochondrion	50.87	50.21
HORVU2Hr1G054470.1	Barley	plastid	43.04	38.82
KRH67956	Soybean	endoplasmic reticulum, nucleus	20.43	28.66
KRH76297	Soybean	cytosol	19.13	26.67
KRG96215	Soybean	nucleus	20.43	21.27
KRH26593	Soybean	nucleus	31.3	11.69
KRH22711	Soybean	nucleus	30.43	11.36
KRH28354	Soybean	nucleus	24.35	9.38
KRH77127	Soybean	nucleus	23.48	9.05
KRH05304	Soybean	nucleus	17.39	8.11
KRG93223	Soybean	nucleus	16.09	5.78
KRH13056	Soybean	nucleus	15.65	5.69

Protein Annotations

EntrezGene:100796043	MapMan:18.12.1	Gene3D:2.40.100.10	EMBL:ACUP02012188	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase
InterPro:Cyclophilin-type_PPIase_dom	EnsemblPlantsGene:GLYMA_20G005600	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824
GO:GO:0005575	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016853	GO:GO:0019538	UniProt:I1NCZ7	InterPro:IPR002130	InterPro:IPR029000
EnsemblPlants:KRG89165	ProteinID:KRG89165	ProteinID:KRG89165.1	PFAM:PF00160	PIRSF:PIRSF001467	PRINTS:PR00153
PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF200	SUPFAM:SSF50891	TMHMM:TMhelix	UniParc:UPI000233D95E
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:532311..536994

Molecular Weight (calculated)

26061.7 Da

IEP (calculated)

9.163

GRAVY (calculated)

-0.140

Length

230 amino acids

Sequence
(BLAST)

001: MGRIKPQALL QQSKRKKGPS RISATIVTFY ALILVMLVFI LFVTYRHWSN RTRLQPESYI SVSEDENTSV ESKKSDLPGY AVVITSKGSI IVELYKESAP
101: EVVDEFIDLC QKGHFKGMLF HQVIKHYIIQ AGHNKGPGAT EDWNLLGKKY ASMRHEAFML GTSKGKYFNK GFDLFITTAP IPDLNEKLIV FGRVIKGQDI
201: VQEIEEVDTD EHYQPKLTIG ILDVALKQIV

Best Arabidopsis Sequence Match ( AT3G66654.4 )
(BLAST)

001: MAKIKPQALL NQSKKKKGPS RISISTIIVC NLVVAVVILS LVTTYRHWSQ RSRNTIEHET RSQRFEDTNT ASGQKTYDLP GFADINTSKG LITVELFKEG
101: SPEVVDKFLD LCQKDHFKGM PFQRVIKNYL VQAGHSPSSI PVEEWTAKGK LRGRLHIGPK HEAFMLGTPK NKGNNKDFEL LITTAPIPDL NDQLIVFGRV
201: LKGEDVVQEI EEVDTDEHFQ PKSPIGITGV VLKLET

Arabidopsis Description

CYP21-4Peptidyl-prolyl cis-trans isomerase CYP21-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C835]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.