CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0048g01780.t01	Wine grape	cytosol	92.73	95.62
Bra032657.1-P	Field mustard	cytosol	92.12	95.0
AT1G01940.1	Thale cress	cytosol	90.91	93.75
Solyc08g006090.2.1	Tomato	cytosol, nucleus	90.91	93.75
PGSC0003DMT400038471	Potato	cytosol	90.3	93.12
EER87777	Sorghum	cytosol	87.27	90.0
Os06t0130500-01	Rice	cytosol	87.27	90.0
Zm00001d036035_P001	Maize	cytosol	85.45	88.12
TraesCS7A01G066500.1	Wheat	cytosol	83.03	85.62
TraesCS4A01G423000.1	Wheat	cytosol	83.03	85.62
TraesCS7D01G060700.1	Wheat	cytosol	82.42	85.0
CDY38037	Canola	mitochondrion, plastid	91.52	78.24
KRH67956	Soybean	endoplasmic reticulum, nucleus	46.06	46.34
KRG96215	Soybean	nucleus	46.06	34.39
KRH34786	Soybean	endoplasmic reticulum	29.7	21.12
KRG89165	Soybean	endoplasmic reticulum	26.67	19.13
KRH49483	Soybean	mitochondrion	25.45	18.67
KRG91995	Soybean	endoplasmic reticulum, mitochondrion, plastid	30.3	17.12
KRH77127	Soybean	nucleus	54.55	15.08
KRH28354	Soybean	nucleus	54.55	15.08
KRH05304	Soybean	nucleus	44.85	15.01
KRH22711	Soybean	nucleus	47.27	12.66
KRH26593	Soybean	nucleus	46.67	12.5
KRG93223	Soybean	nucleus	41.82	10.78
KRH13056	Soybean	nucleus	40.61	10.58

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	EMBL:ACUP02000602	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS
InterPro:Cyclophilin-type_PPIase_dom	EnsemblPlantsGene:GLYMA_01G144800	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824
GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853
GO:GO:0019538	UniProt:I1J7Y9	InterPro:IPR002130	InterPro:IPR029000	EnsemblPlants:KRH76297	ProteinID:KRH76297
ProteinID:KRH76297.1	PFAM:PF00160	PIRSF:PIRSF001467	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072
PANTHER:PTHR11071	PANTHER:PTHR11071:SF147	SUPFAM:SSF50891	UniParc:UPI00023BE8A2	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:47935248..47944542

Molecular Weight (calculated)

18083.7 Da

IEP (calculated)

8.093

GRAVY (calculated)

-0.218

Length

165 amino acids

Sequence
(BLAST)

001: MSVTLHTNLG DIKCEIFCDE VPKTSENFLA LCASGYYDGT IFHRNIKGFM IQGGDPTGTG KGGTSIWGKK FNDEIRESLK HNARGILAMA NSGPNTNGSQ
101: FFLTYAKQPH LNGLYTVFGK VIHGFEVLDL MEKYFVVQTQ TGAGDRPLAE IRLNRVTIHA NPLAG

Best Arabidopsis Sequence Match ( AT1G01940.1 )
(BLAST)

001: MSVTLHTNLG DIKCEIFCDE VPKSAENFLA LCASGYYDGT IFHRNIKGFM IQGGDPKGTG KGGTSIWGKK FNDEIRDSLK HNARGMLSMA NSGPNTNGSQ
101: FFITYAKQPH LNGLYTIFGK VIHGFEVLDI MEKTQTGPGD RPLAEIRLNR VTIHANPLAG

Arabidopsis Description

CYP18-1Peptidyl-prolyl cis-trans isomerase CYP18-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.