Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G01940.1 | Thale cress | cytosol | 98.75 | 98.75 |
| VIT_15s0048g01780.t01 | Wine grape | cytosol | 95.62 | 95.62 |
| Solyc08g006090.2.1 | Tomato | cytosol, nucleus | 93.75 | 93.75 |
| PGSC0003DMT400038471 | Potato | cytosol | 93.12 | 93.12 |
| KRH76297 | Soybean | cytosol | 95.0 | 92.12 |
| Os06t0130500-01 | Rice | cytosol | 89.38 | 89.38 |
| EER87777 | Sorghum | cytosol | 88.75 | 88.75 |
| Zm00001d036035_P001 | Maize | cytosol | 86.88 | 86.88 |
| TraesCS4A01G423000.1 | Wheat | cytosol | 85.0 | 85.0 |
| TraesCS7A01G066500.1 | Wheat | cytosol | 85.0 | 85.0 |
| TraesCS7D01G060700.1 | Wheat | cytosol | 84.38 | 84.38 |
| CDY38037 | Canola | mitochondrion, plastid | 99.38 | 82.38 |
| Bra005297.1-P | Field mustard | cytosol | 49.38 | 48.17 |
| Bra029595.1-P | Field mustard | mitochondrion, plastid | 26.88 | 18.22 |
| Bra011410.1-P | Field mustard | nucleus | 48.12 | 15.59 |
| Bra024442.1-P | Field mustard | cytosol | 52.5 | 14.07 |
| Bra030819.1-P | Field mustard | cytosol | 40.62 | 11.95 |
| Bra019430.1-P | Field mustard | cytosol | 46.25 | 11.9 |
Protein Annotations
| MapMan:18.12.1 | Gene3D:2.40.100.10 | EnsemblPlantsGene:Bra032657 | EnsemblPlants:Bra032657.1 | EnsemblPlants:Bra032657.1-P | InterPro:Cyclophilin-like_dom_sf |
| InterPro:Cyclophilin-type_PPIase | InterPro:Cyclophilin-type_PPIase_CS | InterPro:Cyclophilin-type_PPIase_dom | GO:GO:0000413 | GO:GO:0003674 | GO:GO:0003755 |
| GO:GO:0003824 | GO:GO:0006457 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016853 | GO:GO:0019538 | InterPro:IPR002130 | InterPro:IPR029000 | UniProt:M4EV24 | PFAM:PF00160 |
| PIRSF:PIRSF001467 | PRINTS:PR00153 | ScanProsite:PS00170 | PFscan:PS50072 | PANTHER:PTHR11071 | PANTHER:PTHR11071:SF147 |
| SUPFAM:SSF50891 | UniParc:UPI0001890A68 | SEG:seg | : | : | : |
Description
AT1G01940 (E=1e-082) | peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein
Coordinates
chrA09:+:37040830..37042059
Molecular Weight (calculated)
17450.9 Da
IEP (calculated)
8.097
GRAVY (calculated)
-0.271
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVTLHTNLG DIKCEIFCDE VPKSAENFLA LCASGYYDGT IFHRNIKGFM IQGGDPTGTG KGGTSIWGKK FNDEIRDSLK HNARGMLSMA NSGPNTNGSQ
101: FFITYAKQPH LNGLYTIFGK VIHGFEVLDI MEKTQTGAGD RPLAEIRLNR VTIHANPLAG
101: FFITYAKQPH LNGLYTIFGK VIHGFEVLDI MEKTQTGAGD RPLAEIRLNR VTIHANPLAG
001: MSVTLHTNLG DIKCEIFCDE VPKSAENFLA LCASGYYDGT IFHRNIKGFM IQGGDPKGTG KGGTSIWGKK FNDEIRDSLK HNARGMLSMA NSGPNTNGSQ
101: FFITYAKQPH LNGLYTIFGK VIHGFEVLDI MEKTQTGPGD RPLAEIRLNR VTIHANPLAG
101: FFITYAKQPH LNGLYTIFGK VIHGFEVLDI MEKTQTGPGD RPLAEIRLNR VTIHANPLAG
Arabidopsis Description
CYP18-1Peptidyl-prolyl cis-trans isomerase CYP18-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.