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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
  • cytoskeleton 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra032657.1-P Field mustard cytosol 98.75 98.75
VIT_15s0048g01780.t01 Wine grape cytosol 94.38 94.38
Solyc08g006090.2.1 Tomato cytosol, nucleus 93.75 93.75
PGSC0003DMT400038471 Potato cytosol 93.12 93.12
KRH76297 Soybean cytosol 93.75 90.91
Os06t0130500-01 Rice cytosol 89.38 89.38
EER87777 Sorghum cytosol 88.75 88.75
Zm00001d036035_P001 Maize cytosol 86.88 86.88
TraesCS4A01G423000.1 Wheat cytosol 85.0 85.0
TraesCS7A01G066500.1 Wheat cytosol 85.0 85.0
TraesCS7D01G060700.1 Wheat cytosol 84.38 84.38
CDY38037 Canola mitochondrion, plastid 98.12 81.35
AT2G36130.1 Thale cress cytosol 49.38 48.17
AT2G47320.1 Thale cress golgi, mitochondrion 30.62 21.3
AT3G66654.3 Thale cress plastid 25.62 17.37
AT4G33060.1 Thale cress nucleus 45.62 14.48
AT5G67530.1 Thale cress cytosol 51.88 13.95
AT1G53720.1 Thale cress nucleus 40.62 12.85
AT3G44600.1 Thale cress cytosol 48.75 12.36
Protein Annotations
MapMan:18.12.1Gene3D:2.40.100.10EntrezGene:839309ProteinID:AAF76472.1ProteinID:AEE27356.1ArrayExpress:AT1G01940
EnsemblPlantsGene:AT1G01940RefSeq:AT1G01940TAIR:AT1G01940RefSeq:AT1G01940-TAIR-GEnsemblPlants:AT1G01940.1TAIR:AT1G01940.1
EMBL:AY568515EMBL:BT002879EMBL:BT004403InterPro:Cyclophilin-like_dom_sfInterPro:Cyclophilin-type_PPIaseInterPro:Cyclophilin-type_PPIase_CS
InterPro:Cyclophilin-type_PPIase_domGO:GO:0000413GO:GO:0003674GO:GO:0003755GO:GO:0003824GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006457GO:GO:0006464GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0016853GO:GO:0019538InterPro:IPR002130InterPro:IPR029000
RefSeq:NP_171696.2PFAM:PF00160PIRSF:PIRSF001467PO:PO:0000013PO:PO:0000037PO:PO:0000084
PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281PRINTS:PR00153ScanProsite:PS00170
PFscan:PS50072PANTHER:PTHR11071PANTHER:PTHR11071:SF147UniProt:Q9LPC7SUPFAM:SSF50891UniParc:UPI000000BE15
SEG:seg:::::
Description
CYP18-1Peptidyl-prolyl cis-trans isomerase CYP18-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC7]
Coordinates
chr1:+:322886..324917
Molecular Weight (calculated)
17504.0 Da
IEP (calculated)
8.487
GRAVY (calculated)
-0.312
Length
160 amino acids
Sequence
(BLAST)
001: MSVTLHTNLG DIKCEIFCDE VPKSAENFLA LCASGYYDGT IFHRNIKGFM IQGGDPKGTG KGGTSIWGKK FNDEIRDSLK HNARGMLSMA NSGPNTNGSQ
101: FFITYAKQPH LNGLYTIFGK VIHGFEVLDI MEKTQTGPGD RPLAEIRLNR VTIHANPLAG
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.